Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D24
         (496 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4FSG8 Cluster: Putative uncharacterized protein; n=1; ...    45   0.001
UniRef50_A5Z1D8 Cluster: Putative uncharacterized protein; n=1; ...    44   0.002
UniRef50_Q7P3L2 Cluster: Putative uncharacterized protein FNV020...    33   3.5  
UniRef50_Q4VWW5 Cluster: Ribosomal protein 3/homing endonuclease...    32   6.1  

>UniRef50_A4FSG8 Cluster: Putative uncharacterized protein; n=1;
           Thermobia domestica|Rep: Putative uncharacterized
           protein - Thermobia domestica (firebrat)
          Length = 53

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 25/53 (47%), Positives = 35/53 (66%)
 Frame = -2

Query: 345 LIKRKNYLRDNSVIFFFSSYKKKSLRLDVGLR*NLNAKV*NF*SVRSLKSYMI 187
           +I R +YLRDNSVIFF +SY+++ LR    ++     +   + SVR LKSYMI
Sbjct: 1   MIVRLSYLRDNSVIFFENSYRQERLRPRCWIKILSRCRSLVYRSVRPLKSYMI 53


>UniRef50_A5Z1D8 Cluster: Putative uncharacterized protein; n=1;
           Haemaphysalis qinghaiensis|Rep: Putative uncharacterized
           protein - Haemaphysalis qinghaiensis
          Length = 30

 Score = 43.6 bits (98), Expect = 0.002
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = -1

Query: 235 KSLKFLICSIIKILHDLSSNRCKPGWFLS 149
           K LK  +CS  +ILHDLS +RC+ GWFLS
Sbjct: 2   KKLKKEVCSTFEILHDLSLDRCESGWFLS 30


>UniRef50_Q7P3L2 Cluster: Putative uncharacterized protein FNV0203;
           n=3; Fusobacterium nucleatum|Rep: Putative
           uncharacterized protein FNV0203 - Fusobacterium
           nucleatum subsp. vincentii ATCC 49256
          Length = 246

 Score = 33.1 bits (72), Expect = 3.5
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -2

Query: 468 IKMSYIIINIDLILVFCWGDKKINKTFFIIYI 373
           I +SYI+I + LIL+  W DK   K + II+I
Sbjct: 159 IILSYILIPLCLILLIWWRDKYYKKNYLIIFI 190


>UniRef50_Q4VWW5 Cluster: Ribosomal protein 3/homing
           endonuclease-like protein fusion; n=2; Ophiostoma
           novo-ulmi subsp. americana|Rep: Ribosomal protein
           3/homing endonuclease-like protein fusion - Ophiostoma
           novo-ulmi subsp. americana
          Length = 715

 Score = 32.3 bits (70), Expect = 6.1
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = -2

Query: 384 IIYINK*IFDPILLIKRKNYLRDNSVIFFFSSYKKK 277
           II I   IF   L  K K+YL  N  +FFF S KKK
Sbjct: 139 IILIKNLIFLYSLHFKTKSYLEKNKNLFFFESLKKK 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,826,237
Number of Sequences: 1657284
Number of extensions: 4906032
Number of successful extensions: 10072
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10067
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28855457139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)