Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D23
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    27   1.6  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   3.6  
SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.6  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    25   4.7  

>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +2

Query: 233 TDVVKSFVNMVKVGVLPRGEVFTLNVDRQMKEVVTMFHMLYYAKDFSTFIKTACWMR--- 403
           T VV+ FVN  +  +    EV    + +Q      + + +   +DF+T +  +  M+   
Sbjct: 219 TRVVEVFVNNYQFSIDGNKEVLLAEIPKQYIVTGNLLYRVLELEDFATQMDASIVMKNEL 278

Query: 404 LYLNEGMFVYSLSV 445
           + LNE M  Y  S+
Sbjct: 279 IALNEHMLTYLPSI 292


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -3

Query: 105 SIDTKLTSSFSGRAEAIAARPKTSNTAALILQPT 4
           S+++ +TS+     E +AA+P+ S+TA    +PT
Sbjct: 201 SVNSSVTSNPPHTEEPVAAKPEASSTATKGPRPT 234


>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 377 FIKTACWMRLYLNEGMFVY 433
           F +TA WM+LY N+  ++Y
Sbjct: 189 FKETALWMKLYGNDFCYIY 207


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 331 SHYVPYAILCKGLLNFHQDRLLDAPLP*RRNVCI 432
           SH +   IL    LN+H + ++D  LP     CI
Sbjct: 526 SHRIVSNILMTYFLNYHPEDIIDVGLPLHTLFCI 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,276
Number of Sequences: 5004
Number of extensions: 39410
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)