Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D23
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0791 + 23189778-23190173,23190336-23190554                       29   1.6  
07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319     29   1.6  
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    29   2.1  
08_02_1346 + 26293846-26294511                                         27   6.3  
03_04_0171 + 18001993-18001995,18002527-18002640,18002958-180031...    27   6.3  
12_02_0123 - 13930138-13932471                                         27   8.3  

>12_02_0791 + 23189778-23190173,23190336-23190554
          Length = 204

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 185 LGMNFKIEDNMELYTKTDV-VKSFVNMVKVGVLPRGEVFTLNVDRQMKEVV 334
           L  + K+ D+ +LY + +V +KSF +  ++ V+P+  V  L  DR+   V+
Sbjct: 115 LSASSKVADDGKLYYEVEVNIKSFASNNELAVMPQDRVQRLEWDRRYLSVL 165


>07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319
          Length = 249

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 185 LGMNFKIEDNMELYTKTDV-VKSFVNMVKVGVLPRGEVFTLNVDRQMKEVV 334
           L  + K+ D+ +LY + +V +KSF +  ++ V+P+  V  L  DR+   V+
Sbjct: 160 LSASSKVADDGKLYYEVEVNIKSFASNNELAVMPQDRVQRLEWDRRYLSVL 210


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 22/89 (24%), Positives = 30/89 (33%)
 Frame = -3

Query: 327 SFIWRSTLRVKTSPLGKTPTFTIFTKXXXXXXXXXXXXXXXXLKFMPSSVISLYITGSVT 148
           SF+W    R+   PL        F K                  F  S  I        +
Sbjct: 51  SFVWAVLKRIVPKPL----LGNSFGKRSLRTNIWKFIKLRRFETFQLSDCIGDLKVSHYS 106

Query: 147 WLSNFKMNSCFCLMSIDTKLTSSFSGRAE 61
           WLSN + ++CFC   I  +  SS S   +
Sbjct: 107 WLSNIEFSNCFCSAIIGKQTGSSTSAEEQ 135


>08_02_1346 + 26293846-26294511
          Length = 221

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 283 QRRSFHS*C*PPNEGGSHYVPYAILCK-GLL-NFHQD 387
           QR  F     PPN   +  VPYAILCK G + NF QD
Sbjct: 93  QRAFFQPPPPPPNSAAA--VPYAILCKWGYMGNFLQD 127


>03_04_0171 +
           18001993-18001995,18002527-18002640,18002958-18003127,
           18003408-18003684
          Length = 187

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 394 LDAPLP*RRNVCILPL--CRCQIPRRLQRCSSSSP 492
           L A LP RR VC++P   CRC +  R   C S +P
Sbjct: 104 LSAVLPVRRLVCLIPTRRCRCLLLTR-SCCLSRAP 137


>12_02_0123 - 13930138-13932471
          Length = 777

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 7   RLQDEGCCVTGFRSGRYCLGSS 72
           R++D GC   GF+ GR  +G S
Sbjct: 135 RMEDSGCVAGGFKVGRTTVGHS 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,648,899
Number of Sequences: 37544
Number of extensions: 262583
Number of successful extensions: 494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)