Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D23
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-6|CAB02890.3|  287|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF190910-1|AAF03892.1|  287|Caenorhabditis elegans Smad protein ...    27   5.7  
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho...    27   9.9  
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho...    27   9.9  

>Z81055-6|CAB02890.3|  287|Caenorhabditis elegans Hypothetical
           protein F01G10.8 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -3

Query: 147 WLSNFKMNSCFCLMSIDTKLTSS---FSGRAEAIAARPKTSNTAALILQPTG 1
           WL +  M  C+ + S  T   +    FS  +   + +PKT   A + ++PTG
Sbjct: 22  WLEDAPMPDCYNVPSTSTDENNDPFPFSNISSQSSLKPKTPEKAVVEVRPTG 73


>AF190910-1|AAF03892.1|  287|Caenorhabditis elegans Smad protein
           protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -3

Query: 147 WLSNFKMNSCFCLMSIDTKLTSS---FSGRAEAIAARPKTSNTAALILQPTG 1
           WL +  M  C+ + S  T   +    FS  +   + +PKT   A + ++PTG
Sbjct: 22  WLEDAPMPDCYNVPSTSTDENNDPFPFSNISSQSSLKPKTPEKAVVEVRPTG 73


>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 homolog
            protein 1, isoformb protein.
          Length = 1420

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = -2

Query: 250  ALNNIGFSVELHVVFNFKIH---AKFCDILIHNGLG-DMVKQ 137
            AL+++GF +E H +  F+IH   AK       +GLG +MV++
Sbjct: 924  ALSSLGFKLEKHFLVAFQIHRDVAKVVSDSFMDGLGNEMVEK 965


>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 homolog
            protein 1, isoforma protein.
          Length = 1418

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = -2

Query: 250  ALNNIGFSVELHVVFNFKIH---AKFCDILIHNGLG-DMVKQ 137
            AL+++GF +E H +  F+IH   AK       +GLG +MV++
Sbjct: 924  ALSSLGFKLEKHFLVAFQIHRDVAKVVSDSFMDGLGNEMVEK 965


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,465,564
Number of Sequences: 27780
Number of extensions: 225005
Number of successful extensions: 463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)