Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D23
         (494 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01240.1 68415.m00036 reticulon family protein (RTNLB15) cont...    29   1.7  
At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD, chlor...    27   5.3  
At4g15510.1 68417.m02370 photosystem II reaction center PsbP fam...    27   6.9  
At3g56610.1 68416.m06295 expressed protein                             27   6.9  
At5g59540.1 68418.m07461 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   9.2  
At3g51400.1 68416.m05630 expressed protein contains Pfam profile...    27   9.2  
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    27   9.2  
At1g05030.1 68414.m00504 hexose transporter, putative similar to...    27   9.2  

>At2g01240.1 68415.m00036 reticulon family protein (RTNLB15)
           contains PFam profile PF02453: Reticulon
          Length = 160

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 320 MKEVVTMFHMLYYAKDFSTFIKTACWMRLYLNEGMFVYSLSV 445
           M+  + M + + Y KD  TF+KT  ++ +  N G ++  L++
Sbjct: 65  MEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTI 106


>At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD,
           chloroplast, putative / Mg-protoporphyrin IX chelatase,
           putative (CHLD) similar to Mg-chelatase SP|O24133 from
           Nicotiana tabacum, GB:AF014399 GI:2318116 from [Pisum
           sativum]
          Length = 760

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +2

Query: 173 DITELGMNFKIEDNMELYTKTDVVKSFVNMVKVGVLPRGEVFTLNVDRQMKEVVTMF 343
           D  E  ++ +IE N +   KT++VKS    + +GV     + +++V+  +K   T+F
Sbjct: 150 DEWEDDLDERIEYNADNTIKTEIVKSPFIQIPLGVTEDRLIGSVDVEESVKRGTTVF 206


>At4g15510.1 68417.m02370 photosystem II reaction center PsbP family
           protein contains PsbP domain PF01789; identical to
           SP:O23403 (Arabidopsis thaliana)
          Length = 287

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 185 LGMNFKIEDNMELYTKTDV-VKSFVNMVKVGVLPRGEVFTLNVDRQMKEVV 334
           L  + ++ D+ +LY + +V +KS+ N  ++ V+P+  V  L  +R+   V+
Sbjct: 199 LSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVL 249


>At3g56610.1 68416.m06295 expressed protein 
          Length = 128

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 7   RLQDEGCCVTGFRSGRYCL 63
           RL+  GCC+  F  GR CL
Sbjct: 69  RLKHHGCCLEVFHMGRACL 87


>At5g59540.1 68418.m07461 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to
           desacetoxyvindoline-4-hydroxylase [Catharanthus roseus]
           GI:2352812; contains Pfam profile PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 366

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +2

Query: 302 LNVDRQMKEVVTMFHMLYYAKDFSTFIKTACWMRLYLNEGMFVYSLSVAVRYREDCKGVV 481
           LNV  ++K+ V  FH        S F + A   +   N    +YS S +V +R+     +
Sbjct: 102 LNVLEEIKDGVRRFHEEDPEVKKSFFSRDAGNKKFVYNSNFDLYSSSPSVNWRDSFSCYI 161

Query: 482 LPPP 493
            P P
Sbjct: 162 APDP 165


>At3g51400.1 68416.m05630 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 277

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 48  WPLLPRLVLKMMTSTSYQ-WTSNRNNY 125
           W L+ +LV+K +TSTS Q  T +RN +
Sbjct: 187 WALVTKLVIKNVTSTSGQVRTGHRNEF 213


>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
           (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 21/90 (23%), Positives = 43/90 (47%)
 Frame = +2

Query: 173 DITELGMNFKIEDNMELYTKTDVVKSFVNMVKVGVLPRGEVFTLNVDRQMKEVVTMFHML 352
           ++ E   N+K+ + +E  +     +   N ++ G+L R  V  LN+D  + ++V  F M 
Sbjct: 641 ELIERACNYKLSEVLETCSNIKCSEQDRNKLQKGLLIRESVSALNID-VINKLVEAFMM- 698

Query: 353 YYAKDFSTFIKTACWMRLYLNEGMFVYSLS 442
            +  D+  ++ T  W  L +   + +  LS
Sbjct: 699 -HPADYIQWLTTE-WEELEVEVDVSLKELS 726


>At1g05030.1 68414.m00504 hexose transporter, putative similar to
           hexose transporters from Nicotiana tabacum (GI:8347244),
           Solanum tuberosum (GI:8347246), Arabidopsis thaliana
           (GI:8347250); contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 524

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 238 IGFSVELHVVFNFKIHAKFCDILIHNGLGDMVKQF 134
           +GFS  +H V NF +   F D++   G+G +   F
Sbjct: 453 MGFSFSVHWVSNFLVGLFFLDLVEKYGVGTVYASF 487


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,849,086
Number of Sequences: 28952
Number of extensions: 210762
Number of successful extensions: 490
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)