Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D21
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    25   5.2  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   5.2  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   9.1  

>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 12  LISVSTMVSVRKHLLSMVMCACAL 83
           ++  +T + +R H LSM +CA AL
Sbjct: 134 MLHKATGIRIRDHALSMELCASAL 157


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +2

Query: 248 FTGSAYLAIKPPTSTRSLKMSMKIKAASPV---SDGIIMYCAETPRGYGGFISLAVRNGK 418
           F   ++  +K   S RSLK    +KA +P+   + GII   A  P  +   + L +    
Sbjct: 153 FDKKSHALVKTSDSVRSLKYGSFVKACAPLFRFASGIIK--AHAPHFHQALLKLELAPSA 210

Query: 419 LEF 427
           L F
Sbjct: 211 LRF 213


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 237 SISCFTSQFLPVYVTGQAHL*LSAVFIHLPGPQRPGRHDSPILSQLLPPKP 85
           S+SC    +LP+  T       S + ++     RP    SP +  L PP P
Sbjct: 203 SLSCSPEPYLPLSPTRSPARTPSPIRLYSSDALRPQSPLSPSVEYLTPPNP 253


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 236 EYPAFTGSAYLAIKPPTSTRSLKMSMKIKAASPVSDGIIMYCAETP 373
           EYP F+G    +I  PT++ S++    I   SP+S     + AE P
Sbjct: 202 EYPGFSGLTPFSIHSPTAS-SVRSCQSI-YGSPLSPPNSAFQAEMP 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,325
Number of Sequences: 5004
Number of extensions: 46538
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)