Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D20
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   0.77 
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    26   1.8  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   2.3  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   3.1  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    25   3.1  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   3.1  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    24   5.4  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 0.77
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 207 YWYEFHFVFQVHCVCGRFY---FIHPVIICGYLPFF 109
           YW+ F F F  H  C RF+   FIHP      +PFF
Sbjct: 76  YWFFFFFFFFSH--CRRFHIAIFIHP-YDSNVVPFF 108


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 141 PVIICGY-LPFFVRISSGYADVGVLVVGFNVIGHFFP 34
           P++   + L FF  +S  Y  V  + +  +VI HF+P
Sbjct: 99  PILFSSFVLCFFGNVSGDYGYVDNVPLHISVISHFYP 135


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 31  SREEMTNHVETDNQDADI 84
           S+E++   ++ DNQDADI
Sbjct: 277 SKEKIIERIKNDNQDADI 294


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 14/56 (25%), Positives = 33/56 (58%)
 Frame = +1

Query: 25  ESSREEMTNHVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEV 192
           ESS+E + +  E + ++ D+  + GD +  +  S  DN++ K+ +   +++L +E+
Sbjct: 410 ESSQEGIRSSSENNKKEDDLKDSTGDLNTTQVSSRVDNFLLKLPSMV-SLELTNEM 464


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 125 DICRSLSVSPLATPM 81
           D+CRS+ VS L TP+
Sbjct: 266 DLCRSIHVSTLVTPL 280


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 213 ITYWYEFHFVFQVHCVCGRFYFIHPVIIC 127
           I+ WY FHF  Q+  +   F   + +++C
Sbjct: 209 ISQWYFFHFNLQLQLLRVIFLSTYSLVVC 237


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 10  TEGMMESSREEMTNHVETDNQD---ADIGVARGDTDKERQISTNDN 138
           +E   +S REE  +HV++ N++   + I    GD   E  +S +D+
Sbjct: 205 SEHNTKSIREEPIHHVDSKNEEPVYSKIPEKMGDEFSENSLSKSDS 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,096,717
Number of Sequences: 5004
Number of extensions: 19004
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)