Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_D20
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0176 + 12637287-12637376,12638108-12638280,12638631-126387... 33 0.076
02_05_0508 - 29623173-29623301,29623410-29623575,29623691-296237... 31 0.18
05_04_0091 + 17839118-17839303,17840876-17840923,17841381-178415... 29 0.71
03_05_0674 + 26619579-26619658,26620020-26620746,26620999-266214... 28 2.2
05_04_0006 - 17072576-17072950,17072969-17073179,17075807-17075949 27 3.8
11_03_0162 - 10956997-10957323,10957390-10957568,10957823-109579... 26 8.7
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632... 26 8.7
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673... 26 8.7
05_02_0065 - 6276439-6276462,6276716-6276781,6277035-6277100,627... 26 8.7
02_03_0117 + 15446011-15446117,15446813-15447129,15447529-154475... 26 8.7
01_03_0276 - 14489847-14489921,14490144-14490240,14491480-144915... 26 8.7
>06_02_0176 +
12637287-12637376,12638108-12638280,12638631-12638743,
12639125-12639313,12639397-12639464,12639601-12639684,
12639791-12639844,12640445-12640525,12640615-12640708,
12640830-12640903,12640976-12641086,12641299-12641355,
12641458-12641562,12641656-12641772,12641900-12642003,
12642229-12642394,12642513-12642641
Length = 602
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 108 VRISSGYADVGVLVVGFNVIGHFFPTTFHHPLSH 7
V++ G A + V G +VI H FP T+ PL+H
Sbjct: 34 VKVEYGDAAIAADVAGAHVISHAFPHTYGQPLAH 67
>02_05_0508 -
29623173-29623301,29623410-29623575,29623691-29623794,
29623888-29624004,29624315-29624371,29624475-29624519,
29624610-29624720,29624788-29624861,29624967-29625060,
29625744-29625797,29626040-29626123,29626244-29626311,
29626400-29626588,29627193-29627305,29627525-29627697,
29628444-29628533
Length = 555
Score = 31.5 bits (68), Expect = 0.18
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 108 VRISSGYADVGVLVVGFNVIGHFFPTTFHHPLSH 7
VR+ G A + G +VI H FP T+ PL+H
Sbjct: 34 VRVEYGDAAIAADPAGAHVISHAFPHTYGQPLAH 67
>05_04_0091 +
17839118-17839303,17840876-17840923,17841381-17841526,
17841616-17841664,17842260-17842316,17842460-17842627,
17842950-17843011,17843103-17843190,17843277-17843388,
17843472-17843548,17843622-17843759,17844424-17844588,
17844667-17844780,17845026-17845122,17845242-17845390
Length = 551
Score = 29.5 bits (63), Expect = 0.71
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 7 VTEGMMESSREEMTNHVETDNQDADIGVAR-GDTD-KERQISTNDNWMNKVEATTYAVDL 180
+T+G++ +E + V + I + G+ D K+ +I DN ++E++T +
Sbjct: 431 ITDGVLTDIQETKDSIVRASDLPLSILIVGVGNADFKQMEILDGDNG-KRLESSTGRIAT 489
Query: 181 KDEVEFVPIR 210
+D V+FVP+R
Sbjct: 490 RDIVQFVPMR 499
>03_05_0674 +
26619579-26619658,26620020-26620746,26620999-26621486,
26621746-26621902,26621975-26621998
Length = 491
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 127 TNDNWMNKVEATTYAVDLKDEVEFVPIRY 213
++DN K+ TT V L + V F PIRY
Sbjct: 175 SSDNTAIKIALTTLIVTLPEAVRFRPIRY 203
>05_04_0006 - 17072576-17072950,17072969-17073179,17075807-17075949
Length = 242
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 49 NHVETDNQDADIGVARG--DTDKERQISTNDNWMNKVEATTYA 171
NHVE DNQ+ D + RG +T Q+++ ++ + +A T A
Sbjct: 163 NHVEDDNQEGDGSMGRGGEETLTYAQLASGVRYLLQEKAYTRA 205
>11_03_0162 -
10956997-10957323,10957390-10957568,10957823-10957922,
10959333-10959397,10959480-10959572,10961062-10961607,
10961627-10961678,10961753-10961884,10963049-10963210,
10963532-10963582
Length = 568
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +1
Query: 52 HVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVD 177
+ + AD+ + TD+ R++ TND AT + ++
Sbjct: 272 NASSQGSGADLSASGNGTDQWRRVPTNDRTRVSASATNFGLE 313
>06_03_0640 -
23059473-23060489,23060592-23060651,23063163-23063283,
23063476-23065496
Length = 1072
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +1
Query: 10 TEGMMESSREEM-TNHVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKD 186
TEG ++ + + T E+DN + D + G + + +N + DLKD
Sbjct: 453 TEGQTKTDDKSVHTEEKESDNSEQDGVIVTGGNNMPSNLEHTENEKTDLMQELMVDDLKD 512
Query: 187 EVEFVPI 207
PI
Sbjct: 513 TENLPPI 519
>06_01_0878 +
6735266-6735340,6735946-6736041,6738610-6738720,
6738816-6739309,6739422-6739587,6739666-6739789,
6739874-6739986,6740085-6740693,6743095-6743385,
6743845-6743913,6744099-6744188,6744281-6744696,
6744882-6744969
Length = 913
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 64 DNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEV 192
D++D D A D+DKE+ +N + ++ + T+ + D E+
Sbjct: 484 DSEDGDFDPAGPDSDKEQNDESNSDQSDESDFTSDSDDFCAEI 526
>05_02_0065 -
6276439-6276462,6276716-6276781,6277035-6277100,
6277384-6277449,6277698-6277745,6278233-6278292,
6278418-6278483,6278569-6278652,6278736-6278801,
6278878-6279036,6279106-6279222,6279305-6279397,
6279697-6279900,6280013-6280161,6280234-6280492
Length = 508
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 28 SSREEMTNHVETDNQDA--DIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDE 189
S +E + + V+ N+D D+G A DTD + ++ + N+ ++++DE
Sbjct: 35 SEQETICSDVQEGNEDTNDDVGEANEDTDDDASMNAGEG--NEESDDDVEINVRDE 88
>02_03_0117 +
15446011-15446117,15446813-15447129,15447529-15447599,
15448382-15448573
Length = 228
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 67 NQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEVEFVPI 207
N DI + GD+D E T ++ ++A T K EFVPI
Sbjct: 85 NNGEDIEMGGGDSDSEHVDLTYEHVNPVIQALTRKFRSKAWKEFVPI 131
>01_03_0276 -
14489847-14489921,14490144-14490240,14491480-14491546,
14491748-14491877,14491995-14492152,14493004-14493235,
14493760-14493895,14493982-14494085,14495709-14495987
Length = 425
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 265 YDIRKKKEDFK*KSISLNNVLVRIPLRLSS 176
Y KKE+ + IS N L R+P+RLS+
Sbjct: 259 YFWENKKEEQQITQISRNETLSRLPVRLST 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,495,603
Number of Sequences: 37544
Number of extensions: 106362
Number of successful extensions: 332
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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