Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D20
         (337 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18332| Best HMM Match : WAP (HMM E-Value=9.5)                       31   0.18 
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.23 
SB_40968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.6  
SB_30444| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_38309| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)         27   5.0  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         26   6.6  
SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)                      26   8.7  
SB_52446| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)                    26   8.7  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                26   8.7  

>SB_18332| Best HMM Match : WAP (HMM E-Value=9.5)
          Length = 270

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -2

Query: 207 YWYEFHFVFQVHCVCGRFYFIHPVIICGYLPFFVRISSGYADVGVLVVGFNVIGHFFP 34
           ++ +  FV++    C    F+    +CG+L  F R S G+     L+    +I HF P
Sbjct: 2   HFSQIRFVYRSVLTCYNRSFLKRRFLCGFLAIFGRFSCGFIAASALL---RLIKHFLP 56


>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 34  REEMTNHVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEV 192
           R+E  N  E+ N   +I +   D +   Q+   D+  NKV      +D+ D V
Sbjct: 576 RQEQQNQQESPNLQENINIVLEDCEVPEQVRLEDDSQNKVSTKAKLLDIPDIV 628


>SB_40968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 49  NHVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEVEFVPIR 210
           N  ET++        RG+  K+ +IS     M+K+ AT      K++ +F+PIR
Sbjct: 128 NECETESVRKRCKSTRGNLKKKLRISRPSLNMDKMMATKLYKGKKEKKDFLPIR 181


>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 7   VTEGMMESSREEMTNHVETDNQDADIGVARGDTD 108
           V +G+ +   ++  N  + D++D D GV +GD D
Sbjct: 384 VDDGVNKEDVDDGVNDKDVDDEDVDDGVNKGDVD 417


>SB_30444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 109 KERQISTNDNWMNKVEATTYAVDLKDEVEFVPI 207
           K R + TND WM+       A+  +  V+FV +
Sbjct: 23  KTRHLQTNDTWMSNYRKIQEALLTRKAVQFVVV 55


>SB_38309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
 Frame = +1

Query: 25  ESSREEMTNHVETDNQ----DADIGVARGDTDKERQISTNDNWMNKVEATTYAVD 177
           E   +E  +H ETDN     D D    + D D  R+    DN  N + A  Y  D
Sbjct: 142 EDGYDEYDSHGETDNDDDDGDDDGSGGKDDGDNFRENKVVDNSDNNLAADDYDAD 196


>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 25  ESSREEMTNHVE---TDNQDADIGVARGDTDKERQISTNDNWMNKVEAT 162
           E+S+ +  N  +   T++ D D      D DK++  +TND+  +K   T
Sbjct: 75  EASQSQTVNEDKVPTTNDDDEDKASTTNDDDKDKASTTNDDDQDKASTT 123


>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
          Length = 969

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 13  EGMMESSREEMTNHVETDNQDADIGVARGDTDK-ERQISTNDNWMNKVEATTYAVDLKDE 189
           + + ES RE      E   Q  +    +   DK E++I+T +  MNK++  T   D+K+ 
Sbjct: 685 QSVSESKREREAALAEYKKQAEE---KKEQADKVEKRITTYEEAMNKIKDATGVSDIKEV 741

Query: 190 VE 195
           V+
Sbjct: 742 VQ 743


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
 Frame = +1

Query: 4    PVTEGMMESSREEMTNHVETDNQ----DADIGVARGDTDKERQISTNDN--WMNKVE 156
            P T   M  S  E    V+ D+     DA +G     +   RQ S +D   W NK+E
Sbjct: 892  PETSVTMSQSEVESLPTVQLDDVSSTIDAPVGTGPSPSSSRRQKSVSDQSMWSNKIE 948


>SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)
          Length = 761

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +1

Query: 55  VETDNQDADIGVARGDTDK----ERQISTNDN 138
           +++D  D+DI V +GD  K     +Q ST+DN
Sbjct: 112 IDSDTDDSDIVVMKGDRIKACSETKQCSTDDN 143


>SB_52446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 150 SRSDHIRSGLERRSGIRTNTLLSDILF 230
           S S  +RS  ERR  IRT T+   + F
Sbjct: 40  SPSSILRSDFERRYSIRTKTIAGSLFF 66


>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
          Length = 405

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 174 HCVCGRFYFIHP--VIICGYLPFFVRISSGY 88
           H   G+F ++    V ICGYLP  V  +SGY
Sbjct: 81  HSSDGKFIYVDQRIVSICGYLPQEVIGTSGY 111


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 133  DNWMNKVEATTYAVDLKDEVEFVPIR 210
            +NW+ K    +YA D K  ++F+P+R
Sbjct: 1251 NNWV-KSFTVSYATDSKKGIKFIPVR 1275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,726,682
Number of Sequences: 59808
Number of extensions: 132619
Number of successful extensions: 383
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)