Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D20
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   4.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   5.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   7.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   7.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 149 LFIQLSFVDICRSLSVSPLA 90
           L + L+  D+C +L V P+A
Sbjct: 79  LLVSLAVSDLCVALLVMPMA 98


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 174 HCVCGRFY 151
           H VCGRFY
Sbjct: 123 HEVCGRFY 130


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 7   VTEGMMESSREEMTNHVETDNQDA 78
           V  G +    EE  N  E+D QDA
Sbjct: 334 VGSGEIPLEEEEWENENESDYQDA 357


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 100 DTDKERQISTNDNWMNKV 153
           D D++ QI T + W+ ++
Sbjct: 44  DVDEKNQILTTNCWVTQI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,877
Number of Sequences: 438
Number of extensions: 1242
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)