Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D20
         (337 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56250.2 68418.m07020 expressed protein                             32   0.11 
At5g56250.1 68418.m07019 expressed protein                             32   0.11 
At3g25980.1 68416.m03237 mitotic spindle checkpoint protein, put...    28   1.8  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    27   4.1  
At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family pr...    26   5.4  
At2g22795.1 68415.m02704 expressed protein                             26   5.4  
At4g21460.1 68417.m03104 expressed protein                             26   7.2  
At3g14900.1 68416.m01884 expressed protein                             25   9.5  
At1g08860.1 68414.m00987 copine, putative Similar to BONZAI1 [Ar...    25   9.5  

>At5g56250.2 68418.m07020 expressed protein
          Length = 811

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 4   PVTEGMMESSREEMTNHVETDNQDADIGVARGDTDKERQISTNDNW 141
           PV  G+M+  +  M     ++N+D DIG    +  +ER++S  D W
Sbjct: 493 PVARGVMKFKKARMDF---SENEDEDIGKWESEMTQERELSDYDGW 535


>At5g56250.1 68418.m07019 expressed protein
          Length = 811

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 4   PVTEGMMESSREEMTNHVETDNQDADIGVARGDTDKERQISTNDNW 141
           PV  G+M+  +  M     ++N+D DIG    +  +ER++S  D W
Sbjct: 493 PVARGVMKFKKARMDF---SENEDEDIGKWESEMTQERELSDYDGW 535


>At3g25980.1 68416.m03237 mitotic spindle checkpoint protein,
           putative (MAD2) identical to Swiss-Prot:Q9LU93 mitotic
           spindle checkpoint protein MAD2 [Arabidopsis thaliana]
          Length = 209

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +1

Query: 37  EEMTNHVETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEVEFVPIRY 213
           E     +ETDN+  D GV+R  +DKE              + TY   L +   F  + Y
Sbjct: 99  ERWNFRIETDNEVVDKGVSREKSDKEIMREIQAIMRQVASSVTYLPCLDETCVFDVLAY 157


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 25  ESSREEMTNHV-ETDNQDA-DIGVARGDTDKERQISTNDN 138
           E S EE+ N V + D++DA D  VA  D D++   + +DN
Sbjct: 116 EESSEELINEVVDYDHEDAGDDAVANEDDDEDAVPNDDDN 155


>At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family
           protein
          Length = 592

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 25  ESSREEMTNHVETDNQDADIGVARGDTDKERQISTNDNWMNKVE 156
           ES +EE+   ++  +++ + G   G   KER+ S  D+  + +E
Sbjct: 468 ESDKEEIQKKLDGMSKEGNNGKGCGSRAKERKSSNQDSTASSIE 511


>At2g22795.1 68415.m02704 expressed protein
          Length = 734

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 10  TEGMMESSREEMTNHVETDNQDADIGVARGDT-DKERQISTNDNWMNKVEATTYAVDLKD 186
           T+   ESS +E T   ET+ +D +   ++ +T DKE +    +   ++ E+     + K+
Sbjct: 508 TKEKEESSSQEKTEEKETETKDNEESSSQEETKDKENEKIEKEEASSQEESKENETETKE 567

Query: 187 EVE 195
           + E
Sbjct: 568 KEE 570


>At4g21460.1 68417.m03104 expressed protein
          Length = 415

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 67  NQDADIGVARGDTDK---ERQISTNDNWMNKVEATTYAVDLKDE 189
           N+DA  GV      +   ++   T+D  M K+E+  +  D+KDE
Sbjct: 90  NEDALPGVIEALLQRRLVDKHAETDDELMEKIESLPFKDDVKDE 133


>At3g14900.1 68416.m01884 expressed protein
          Length = 611

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 58  ETDNQDADIGVARGDTDKERQISTNDNWMNKVEATTYAVDLKDEVE 195
           E DN D D      D + E ++  +DN +  VE       L+DE+E
Sbjct: 438 EADNDDDDDDDDDDDGEVE-EVDDDDNMVVDVEGNVEEDSLEDEIE 482


>At1g08860.1 68414.m00987 copine, putative Similar to BONZAI1
           [Arabidopsis thaliana] GI:15487382; contains Pfam
           profile PF00168: C2 domain
          Length = 589

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 88  VARGDTD-KERQISTNDNWMNKVEATTYAVDLKDEVEFVPIR 210
           V  G+TD K+ ++   DN   ++E++T  +  +D V+FVP++
Sbjct: 511 VGVGNTDFKQMEMLDADNG-RRLESSTGRIATRDIVQFVPMK 551


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,489,559
Number of Sequences: 28952
Number of extensions: 93645
Number of successful extensions: 324
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)