Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D19
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   222   1e-58
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             220   5e-58
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    31   0.34 
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con...    29   1.8  
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi...    29   2.4  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   3.2  
At4g24170.1 68417.m03468 kinesin motor family protein contains P...    28   4.2  
At5g07820.1 68418.m00896 expressed protein                             27   5.5  
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ...    27   5.5  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    27   5.5  
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH...    27   7.3  
At2g43795.1 68415.m05444 hypothetical protein                          27   7.3  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    27   7.3  
At4g14160.3 68417.m02185 transport protein, putative similar to ...    27   9.7  
At4g14160.2 68417.m02186 transport protein, putative similar to ...    27   9.7  
At4g14160.1 68417.m02184 transport protein, putative similar to ...    27   9.7  
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    27   9.7  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  222 bits (542), Expect = 1e-58
 Identities = 107/159 (67%), Positives = 124/159 (77%), Gaps = 2/159 (1%)
 Frame = +3

Query: 9   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 188
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 189 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 362
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 363 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV 479
            ++PGLTD E PR  GPKRASKIRKLFNLKKEDDVR YV
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYV 159


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  220 bits (537), Expect = 5e-58
 Identities = 108/171 (63%), Positives = 129/171 (75%), Gaps = 4/171 (2%)
 Frame = +3

Query: 9   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 188
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 189 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 362
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 363 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEG 509
            ++PGLTD E PR  GPKRASKIRKLFNL KEDDVR+YV   +R    K+G
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKG 171


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 378 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKE 506
           + +G V ++   ++A +  K   +KKEDDVR+  +KRL   K+
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKK 330


>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
           contains Pfam profile PF00297: ribosomal protein L3
          Length = 271

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +3

Query: 276 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGEVPRRLGPKRASKIRKLFNL 449
           G ++    RG +   + S  AL  +  GA   PG      ++P R+G  R +KIRKL  +
Sbjct: 177 GIKRHHFKRGQMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTR-TKIRKLKIV 233

Query: 450 KKEDDVRRYVVKRLLPAKEG 509
           K + ++   ++K  LP K G
Sbjct: 234 KVDKELNVVMIKGALPGKPG 253


>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1155

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 21/94 (22%), Positives = 43/94 (45%)
 Frame = +3

Query: 48  KLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRV 227
           K  E    +++R+   +R  AE+  +LLG + K   LR  G  D+    + Q  +  +++
Sbjct: 595 KTAEAQGAYEVRVTKPRRTKAEIQRELLGLKRKALTLRRQGNVDEAEEVLNQTQILEAQI 654

Query: 228 RLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLS 329
            + +  G + Y    D ++ +K       D+ L+
Sbjct: 655 -MEIDSGKNLY---ADSDQPKKRSNDLATDSRLN 684


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 366 EIPGLTDGEVPRRLGPKRASKIRKLFNLKKE 458
           E+PGL D  V   L PK+ ++++KL   K++
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKLRREKRK 650


>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1004

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 123 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 290
           DL G E     L  AG   K+G  + + +LT   V   +SKG + + P RD +  R
Sbjct: 231 DLAGSERASQTLS-AGSRLKEGCHINRSLLTLGTVIRKLSKGKNGHIPYRDSKLTR 285


>At5g07820.1 68418.m00896 expressed protein
          Length = 561

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 400 RGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDL 290
           + TSPSVSP +       +   K  R++    P+ DL
Sbjct: 161 KSTSPSVSPVVRTVKKTNLVVNKASRISQNKSPKEDL 197


>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 641

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 414 KRASKIRKLFN--LKKEDDVRRYVVKRLLP 497
           KR + I KL +  L++ +D+R Y+V  LLP
Sbjct: 579 KRVNVIEKLMSKTLREREDMRSYIVHELLP 608


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 45  QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 140
           +KL+ EV DE KLR+ YE++       D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
           (CHX20) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 842

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -2

Query: 174 YRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LR 1
           Y+   G H    R+L+DL   Q       R  AC H P  ++S I L    R+T  LR
Sbjct: 434 YKPARGTH----RKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILR 487


>At2g43795.1 68415.m05444 hypothetical protein
          Length = 170

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 258 YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRK 437
           YR + D ER  K  +G    +++S       RKG +E   +   E+PR    KR S IRK
Sbjct: 54  YRAQLDAERAMKLSKGRNYSSDIS-------RKGRRESSQIESAEIPRGRKAKRES-IRK 105


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 30  PATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPM 197
           P   CQ +  V D  +   FYEK  G E+       E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At4g14160.3 68417.m02185 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 620

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 332 LSPGHCPQRCTG 367
           + PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275


>At4g14160.2 68417.m02186 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 772

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 332 LSPGHCPQRCTG 367
           + PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275


>At4g14160.1 68417.m02184 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 621

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 332 LSPGHCPQRCTG 367
           + PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 270 RDGERKRKSVRGCIV--DANLSVLALVIVRKGAQEIPGLTD-GEVPRRL 407
           R G  K   V   +V  D    ++ +   ++G  ++PG+TD G VPR++
Sbjct: 264 RAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKI 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,890,824
Number of Sequences: 28952
Number of extensions: 220521
Number of successful extensions: 550
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)