Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D17
         (139 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   1.8  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    24   2.4  
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    23   4.2  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    23   4.2  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    22   9.6  

>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 77  GFITARVVAGWIVTARCNSF 18
           G +   +  GWI+T R N+F
Sbjct: 784 GVLLGSIAIGWIITMRYNAF 803


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 35  PLRSIPLRPWPL*SRSLQP 91
           P R +P +P P  S SLQP
Sbjct: 53  PTRRLPRKPLPFRSTSLQP 71


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 71  ITARVVAGWIVTARCN 24
           ITAR+VA  + TA CN
Sbjct: 109 ITARLVANMLQTAGCN 124


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 5   HGFAQNCCTW 34
           HGF+ +CC W
Sbjct: 295 HGFSVSCCCW 304


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 4   PRLCPKLLHLAVTIHPATTLAVMKPVVTT 90
           P+L P L H+  TI      +V++  +TT
Sbjct: 293 PKLLPGLYHIKDTIGDPECRSVVQRAITT 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 526,747
Number of Sequences: 5004
Number of extensions: 6803
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)