Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_D17
(139 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0628 - 4691991-4692806,4694291-4694293,4694527-4694637 32 0.074
11_05_0013 + 18383235-18383702,18385570-18386571 27 2.8
05_02_0120 - 6797954-6798970,6799466-6799951 27 2.8
02_01_0097 + 712586-713035,714120-715080,715577-715746 27 2.8
03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594 26 3.7
07_03_1176 + 24567720-24570932 26 4.8
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450... 25 6.4
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852... 25 6.4
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 25 6.4
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142... 25 6.4
10_08_0338 + 16916429-16916650,16916728-16917900 25 8.5
09_06_0322 - 22329897-22330078,22330569-22331928 25 8.5
02_02_0687 + 12969381-12969848,12969961-12970992 25 8.5
01_03_0055 + 12074512-12076155 25 8.5
>07_01_0628 - 4691991-4692806,4694291-4694293,4694527-4694637
Length = 309
Score = 31.9 bits (69), Expect = 0.074
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 36 RYDPSRYDPGRYEAGRYNPGRXDN--SGRYDPSSD 134
RY RYD GRY RY G D + RY P++D
Sbjct: 182 RYVDDRYDGGRYVDDRYGGGGRDRYATDRYPPTAD 216
>11_05_0013 + 18383235-18383702,18385570-18386571
Length = 489
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 30 PGRYDPSRYDPGRYE 74
P YDP RY PGR E
Sbjct: 398 PDSYDPDRYAPGREE 412
>05_02_0120 - 6797954-6798970,6799466-6799951
Length = 500
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 42 DPSRYDPGRYEAGR 83
DP +DPGR+ AGR
Sbjct: 413 DPGEFDPGRFGAGR 426
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 57 DPGRYEAGRYNPGRXDNSG 113
DPG ++ GR+ GR + +G
Sbjct: 413 DPGEFDPGRFGAGREEGAG 431
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 9 ALPKTVA-PGRYDPSRYDPGRYE 74
ALP+ PG +DP R+ GR E
Sbjct: 406 ALPRVYRDPGEFDPGRFGAGREE 428
>02_01_0097 + 712586-713035,714120-715080,715577-715746
Length = 526
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 30 PGRYDPSRYDPGRYE 74
P YDPSR+ PGR E
Sbjct: 395 PNVYDPSRFGPGREE 409
>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
Length = 323
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 51 RYDPGRYEAG--RYNPGRXDNSGRYDPSS 131
RY RY +G RY P R RY PSS
Sbjct: 204 RYANDRYPSGGDRYVPDRYGGPDRYQPSS 232
>07_03_1176 + 24567720-24570932
Length = 1070
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 5 HGFAQNCCTWPLRSIPL 55
H FAQN T P++S+PL
Sbjct: 449 HSFAQNNFTGPVKSLPL 465
>09_02_0121 +
4502628-4502696,4503727-4503829,4504205-4504328,
4505963-4506306,4506383-4506487,4507907-4508288,
4509173-4509437,4509936-4510094,4511150-4511201,
4511266-4511462,4512865-4513350,4513797-4514093
Length = 860
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 30 PGRYDPSRYDPGRYEAGRYNPGRXDNSGRYDPS 128
PG+Y + Y PG + + G G YD S
Sbjct: 693 PGKYPTNTYKPGANNGTQTHVGNHGAYGTYDSS 725
>07_03_1116 -
24084162-24084201,24084481-24084570,24084640-24085220,
24085653-24085822,24086006-24087074
Length = 649
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = +3
Query: 3 STALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNSGRYDPSSD 134
S + P PG P+ Y+ +++ PG +G Y +D
Sbjct: 542 SASKPYQYTPGSVAPASYNSNQFKVAYGGPGAPPTAGGYGSYND 585
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 120 RSDLSCRSVPGCNDRLHNGQGRSGMDRNGQVQQ 22
++ L+C PGC + GR+ +++ QVQ+
Sbjct: 392 KTSLTCLLSPGCGFNIFRIFGRTEVNQEAQVQE 424
>04_04_1500 +
34010819-34011016,34013267-34013308,34014195-34014204,
34014526-34014586,34014621-34014678,34015266-34015412,
34015643-34016205,34018942-34019728
Length = 621
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = -2
Query: 129 CWGRSDLSCRSVPGCNDRLHNGQGRSGMDRNGQVQQ 22
CW + S ++P + G G D NG V +
Sbjct: 290 CWLEEETSAGALPAAGEGEDGGNGNGDGDGNGAVNE 325
>10_08_0338 + 16916429-16916650,16916728-16917900
Length = 464
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +3
Query: 9 ALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNSGRYDPSSD 134
ALP+ PG R G + N G NSG YD D
Sbjct: 203 ALPREANPGSGSGGRSMGGGGGGYQSNNGPNSNSGGYDSRGD 244
>09_06_0322 - 22329897-22330078,22330569-22331928
Length = 513
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 105 CRSVPGCNDRLHNGQGRSGMDRNGQVQQFWAK 10
C P +RLH G +D NG V F AK
Sbjct: 371 CHPTPTL-ERLHIGHPLLSLDNNGDVVYFMAK 401
>02_02_0687 + 12969381-12969848,12969961-12970992
Length = 499
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 3 STALPKTVAPGRY-DPSRYDPGRYEAGR 83
S + T+ P Y DP +DP R+ AGR
Sbjct: 394 SPLVVNTLLPNIYKDPHVFDPDRFAAGR 421
>01_03_0055 + 12074512-12076155
Length = 547
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 93 PGCNDRLHNGQGRSGMDRNGQVQQFWAKPWT 1
PG +D + NG G+ G+ + Q PWT
Sbjct: 72 PGHDDGMGNGAGKGGVVQQQQQPGSVGCPWT 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,880,207
Number of Sequences: 37544
Number of extensions: 56048
Number of successful extensions: 228
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 26
effective length of database: 13,817,204
effective search space used: 262526876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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