Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_D17
(139 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12) 28 1.0
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 28 1.3
SB_4008| Best HMM Match : Fer4 (HMM E-Value=0.16) 27 1.8
SB_5386| Best HMM Match : GRP (HMM E-Value=0.012) 27 3.1
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36) 26 4.0
SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24) 26 5.4
SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24) 26 5.4
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31) 25 7.1
SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77) 25 7.1
SB_49205| Best HMM Match : DUF134 (HMM E-Value=0.96) 25 9.4
SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17) 25 9.4
>SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12)
Length = 828
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 15 PKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNSGRYDPSSDN 137
PK+ PG +P Y PG Y PG + G Y P N
Sbjct: 540 PKSWEPGYTNPPGYGPGYTNPPGYGPGYTNPPG-YGPGYTN 579
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +3
Query: 15 PKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNSGRYDPSSDN 137
P PG +P Y PG Y PG + G Y P N
Sbjct: 550 PPGYGPGYTNPPGYGPGYTNPPGYGPGYTNTPG-YGPGYTN 589
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +3
Query: 15 PKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNSGRYDPSSDN 137
P PG +P Y PG Y PG + G Y P N
Sbjct: 560 PPGYGPGYTNPPGYGPGYTNTPGYGPGYTNPPG-YGPGYPN 599
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +3
Query: 6 TALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNSGRYDPSSDN 137
T P PG +P Y PG Y PG ++ G Y P N
Sbjct: 767 TLNPLGYGPGYTNPPGYGPGYTNPPDYGPGYTNSLG-YGPRYTN 809
>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 1021
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +3
Query: 15 PKTVAPGRYDPSRYDPGRYEAGRYNPGRXD----NSGRYDP 125
P PGR DP PGR + PGR D GR DP
Sbjct: 679 PYIKQPGRDDPYNKQPGRDDPYIKQPGRDDPYIKQPGRDDP 719
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +3
Query: 15 PKTVAPGRYDPSRYDPGRYEAGRYNPGRXD----NSGRYDP 125
P PGR DP PGR + PGR D GR DP
Sbjct: 699 PYIKQPGRDDPYIKQPGRDDPYIKQPGRDDPYNKQPGRDDP 739
>SB_4008| Best HMM Match : Fer4 (HMM E-Value=0.16)
Length = 444
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 135 CHCWGRSDLSCRSVPGCNDRLHNGQGRSGMDR 40
C+ + D C S G +R+H+ +GR+ + R
Sbjct: 9 CYNYDPKDAMCPSWKGTRERIHSPKGRASLTR 40
>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
Length = 800
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 30 PGRYDPSRYDPGRYEAGRYNPGRXDNSG 113
PG DP DPG + G +PG D+ G
Sbjct: 340 PGGGDPGGGDPGGGDPGGGDPGGGDHGG 367
>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
Length = 821
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 30 PGRYDPSRYDPGRYEAGRYNPGRXDNSGR 116
PGR + PGR G PGR N R
Sbjct: 474 PGRVTNKKRQPGRVTNGERPPGRVTNEKR 502
>SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)
Length = 2278
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 3 STALPKTVAPGRYDPSRYDPGRYEAGRY 86
S ALP V G SRY G+ E +Y
Sbjct: 426 SVALPAVVRAGGQGSSRYSMGKMEPAQY 453
>SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)
Length = 1592
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 36 RYDPSRYDPGRYEAGRYNPGRXDNSGRYDPS 128
R D YDP RY+ R R D G YDP+
Sbjct: 645 RPDKVGYDPTRYDTTRQGGIRPDKVG-YDPT 674
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 36 RYDPSRYDPGRYEAGRYNPGRXDNSGRYDPS 128
R D YDP RY+ R R D G YDP+
Sbjct: 665 RPDKVGYDPTRYDTTRQGRIRPDKVG-YDPT 694
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 36 RYDPSRYDPGRYEAGRYNPGRXDNSGRYDPS 128
R D YDP RY+ R + D G YDP+
Sbjct: 605 RPDKVGYDPTRYDTTRQGRTQPDKVG-YDPT 634
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 3 STALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNSGRYDPSSDN 137
S+ P+ + G + SRY PG + + +P R + R+D +S N
Sbjct: 2961 SSLTPRNDSNGS-NTSRYQPGSHLSKSSSPRRYSLTPRHDSNSSN 3004
>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
Length = 1399
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 126 WGRSDLSCRSVPGCNDR-LHNGQGRSGMDRNGQVQ 25
WG+++ C+ V C+D L G+ S ++ Q
Sbjct: 886 WGKTEAQCKDVDECSDGVLREGKQESACHKDAACQ 920
>SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77)
Length = 872
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +3
Query: 27 APGRYDPSRYDPGRYEAGRYNPGRXDNS 110
A G Y Y G Y G Y G D+S
Sbjct: 67 AGGNYTDGNYADGYYAGGNYADGNHDDS 94
>SB_49205| Best HMM Match : DUF134 (HMM E-Value=0.96)
Length = 165
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 123 GRSDLSCRSVPGCNDRLHNGQGRSGMDRNGQVQQFWAKPWT 1
GR+ + RS GC+ R + Q S G VQ+F P T
Sbjct: 3 GRTSMRTRS-SGCDSRSSHKQSESTKVLPGVVQKFIKNPMT 42
>SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)
Length = 1828
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 6 TALPKTVAPGRYDPSRYDPGRYEAGRYNPG 95
+AL + A ++D RYD G + Y PG
Sbjct: 19 SALTRDTAGRKFDVRRYDTGTCKYKGYKPG 48
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,425,728
Number of Sequences: 59808
Number of extensions: 68133
Number of successful extensions: 288
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 16,821,457
effective HSP length: 26
effective length of database: 15,266,449
effective search space used: 290062531
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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