Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_D17
(139 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81098-1|CAB03183.1| 581|Caenorhabditis elegans Hypothetical pr... 27 1.4
Z81555-6|CAJ85762.1| 709|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z81555-5|CAB04517.2| 694|Caenorhabditis elegans Hypothetical pr... 27 1.8
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 27 1.8
U40933-4|AAA81674.1| 778|Caenorhabditis elegans Caenorhabditis ... 27 2.4
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 25 5.6
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 25 5.6
AF099913-15|AAC68744.1| 284|Caenorhabditis elegans Hypothetical... 25 7.4
U40427-3|AAA81469.1| 320|Caenorhabditis elegans Hypothetical pr... 25 9.7
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 25 9.7
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 25 9.7
>Z81098-1|CAB03183.1| 581|Caenorhabditis elegans Hypothetical
protein K07A12.1 protein.
Length = 581
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 9 ALPKTVAPGRYDPSRYDPGRYEAGR 83
A + V PG+ D +R+ PGR GR
Sbjct: 79 AFKEAVTPGQTDENRWPPGRRATGR 103
>Z81555-6|CAJ85762.1| 709|Caenorhabditis elegans Hypothetical
protein F58E10.1b protein.
Length = 709
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 108 SCRSVPGCNDRLHNGQGRSGMDRNGQVQQ 22
SC S+ C+D NG R G D G Q
Sbjct: 409 SCASLEWCDDIDRNGPSRIGFDEEGSSPQ 437
>Z81555-5|CAB04517.2| 694|Caenorhabditis elegans Hypothetical
protein F58E10.1a protein.
Length = 694
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 108 SCRSVPGCNDRLHNGQGRSGMDRNGQVQQ 22
SC S+ C+D NG R G D G Q
Sbjct: 394 SCASLEWCDDIDRNGPSRIGFDEEGSSPQ 422
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +3
Query: 3 STALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNS----GRYDPS 128
S A P PG +DPS P G +NP S G +DPS
Sbjct: 293 SGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPS 338
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +3
Query: 3 STALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNS----GRYDPS 128
S A P PG +DPS P G +NP S G +DPS
Sbjct: 233 SGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPS 278
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +3
Query: 3 STALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNS----GRYDPS 128
S A P PG +DPS P G +NP S G +DPS
Sbjct: 323 SGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPS 368
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +3
Query: 3 STALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNS----GRYDPS 128
S A P PG +DPS P G +NP S G +DPS
Sbjct: 473 SGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPS 518
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 3 STALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNSG 113
S A P PG +DPS P G +NP SG
Sbjct: 383 SGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 419
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Frame = +3
Query: 3 STALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNS----GRYDPS 128
S A P PG + PS P G +NP S G +DPS
Sbjct: 173 SGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPS 218
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +3
Query: 3 STALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNS----GRYDPS 128
S A P PG +DPS P G ++P S G +DPS
Sbjct: 263 SGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPS 308
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 3 STALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNSG 113
S A P PG +DPS P G ++P SG
Sbjct: 278 SGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSG 314
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +3
Query: 3 STALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNS----GRYDPS 128
S A P PG +DPS P G ++P S G +DPS
Sbjct: 353 SGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPS 398
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +3
Query: 3 STALPKTVAPGRYDPSRYDPGRYEAGRYNPGRXDNS----GRYDPS 128
S A P PG ++PS P G +NP S G +DPS
Sbjct: 443 SGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPS 488
>U40933-4|AAA81674.1| 778|Caenorhabditis elegans Caenorhabditis
zeste white 10 (drosophila) homolog protein 1 protein.
Length = 778
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 126 WGRSDLSCRSVPGCNDRLHNGQGRSGMDRNGQVQQFWAK 10
WG + L+C+ + L G GR G D + ++ F A+
Sbjct: 119 WGTAILACKDFLNDTNMLLEGIGRDGFDMSVPLKHFAAE 157
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
glp-1 protein.
Length = 1492
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = +3
Query: 27 APGRYDPSRY-DPGRYEA 77
AP YDPSRY DP Y A
Sbjct: 894 APYGYDPSRYQDPSTYPA 911
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = +3
Query: 27 APGRYDPSRY-DPGRYEA 77
AP YDPSRY DP Y A
Sbjct: 914 APYGYDPSRYQDPSTYPA 931
>AF099913-15|AAC68744.1| 284|Caenorhabditis elegans Hypothetical
protein C29F9.1 protein.
Length = 284
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 108 SCRSVPGCNDRLHNGQGRSGMDRNGQVQQFW 16
SCR VP C+ L + + N Q++ W
Sbjct: 80 SCRPVPQCDFNLESDRWEEDQLENPQIKSQW 110
>U40427-3|AAA81469.1| 320|Caenorhabditis elegans Hypothetical
protein F43C9.1 protein.
Length = 320
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +2
Query: 14 AQNCCTWPLRSIPLR 58
A CC WP+ +P R
Sbjct: 291 ASTCCIWPVFDVPAR 305
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 30 PGRYDPSRYDPGRYEAGRYNPG 95
PG P+ + PG RY PG
Sbjct: 225 PGSTPPATFPPGSVSTVRYTPG 246
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 30 PGRYDPSRYDPGRYEAGRYNPG 95
PG P+ + PG RY PG
Sbjct: 148 PGSTPPATFPPGSISTVRYTPG 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,311
Number of Sequences: 27780
Number of extensions: 42512
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 12,740,198
effective HSP length: 26
effective length of database: 12,017,918
effective search space used: 228340442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -