Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_D17
(139 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 27 1.7
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 27 1.7
At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK... 27 2.3
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 27 2.3
At3g48500.1 68416.m05294 expressed protein 26 3.0
At1g15040.2 68414.m01798 glutamine amidotransferase-related 26 3.0
At1g15040.1 68414.m01797 glutamine amidotransferase-related 26 3.0
At1g11680.1 68414.m01341 obtusifoliol 14-demethylase (CYP51) ide... 26 4.0
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 25 6.9
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 39 YDPSRYDPGRYEAGRYNPGRXDNSGRY 119
Y+ SRYD G G Y G +G Y
Sbjct: 152 YESSRYDGGSRSGGSYGSGSQRENGSY 178
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 39 YDPSRYDPGRYEAGRYNPGRXDNSGRY 119
Y+ SRYD G G Y G +G Y
Sbjct: 152 YESSRYDGGSRSGGSYGSGSQRENGSY 178
>At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK,
putative similar to cyclin dependent kinase C
[Lycopersicon esculentum] gi|15215944|emb|CAC51391
Length = 505
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 45 PSRYDPGRYEAGRYNPGRXD-NSGRYDP 125
P+RY P ++G YN R +SG Y P
Sbjct: 425 PNRYPPSGNQSGGYNQSRGGYSSGSYPP 452
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 138 NCHCWGRSDLSCRSVPGCNDRLHNGQGRSGMDRNGQ 31
N HC+G D+ V L++G G G + NG+
Sbjct: 113 NGHCYGELDVLTNIVNNSLSYLNSGGGGGGSNGNGE 148
>At3g48500.1 68416.m05294 expressed protein
Length = 668
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 72 EAGRYNPGRXDNSGRYDPSS 131
E GRY PG +YDP+S
Sbjct: 540 EPGRYKPGSFFGKDQYDPTS 559
>At1g15040.2 68414.m01798 glutamine amidotransferase-related
Length = 333
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 15 PKTVAPGRYDPSRYDP--GRYEAG-RYNPGR 98
P + G YDP+RYDP G++ G +++P R
Sbjct: 219 PDGLIEGFYDPNRYDPKEGQFLMGLQFHPER 249
>At1g15040.1 68414.m01797 glutamine amidotransferase-related
Length = 395
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 15 PKTVAPGRYDPSRYDP--GRYEAG-RYNPGR 98
P + G YDP+RYDP G++ G +++P R
Sbjct: 219 PDGLIEGFYDPNRYDPKEGQFLMGLQFHPER 249
>At1g11680.1 68414.m01341 obtusifoliol 14-demethylase (CYP51)
identical to obtusifoliol 14-demethylase (GI:14624983)
[Arabidopsis thaliana]
Length = 488
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 30 PGRYDPSRYDPGRYE 74
P YDP R+ PGR E
Sbjct: 400 PDTYDPERFSPGREE 414
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 25.0 bits (52), Expect = 6.9
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +3
Query: 30 PGRYDPSRYDPGRY--EAGRYNPGRXDNSGRYDPS 128
PG Y P+ Y PG Y G Y P G Y P+
Sbjct: 41 PGAYPPAGYPPGAYPPAPGGYPP--APGYGGYPPA 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,710
Number of Sequences: 28952
Number of extensions: 39574
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,070,560
effective HSP length: 26
effective length of database: 11,317,808
effective search space used: 215038352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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