Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D16
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   1.6  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   2.7  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   3.6  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   4.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   4.7  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    25   6.3  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.3  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   8.3  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   8.3  

>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 332 PQGEPGMPGIPGRDGCNGTDGEVGAEGPKGYQGP 433
           P+G+ GM  +PGR   NG        G  G   P
Sbjct: 94  PEGKAGMQTLPGRPASNGPTPPNPGNGNVGLNNP 127


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = -3

Query: 275 LLALEDLENLFAPFV--LWDLADLRRLH-VRGDLLCQWVQG----CQEIPCYPFLRNILA 117
           +L L DL + F   +  + D     R+H +R  +    V      CQ +P Y   RN++ 
Sbjct: 256 ILVLRDLTSRFIDMIHDICDSVLFSRIHDIRASIRIVCVTALYDCCQLLPTYLINRNLIR 315

Query: 116 HNNQSLCNCDPQ 81
           H+   L + + Q
Sbjct: 316 HSGWGLSDAESQ 327


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 278 HLLALEDLENLFAPF 234
           H+LA  DLEN F PF
Sbjct: 355 HMLAASDLENPFVPF 369


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 137 FLRNILAHNNQSLCNCDPQ 81
           FLRN+L HN+Q   +  P+
Sbjct: 194 FLRNVLVHNDQRAISAAPE 212


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +2

Query: 344 PGMPGIPGRDGCNGTDGEVGAEGPKGYQGPRGL 442
           P MPGIPG     G  G            P G+
Sbjct: 546 PAMPGIPGATAPPGAPGSYNTSESSNLNAPPGV 578


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +2

Query: 47  VYDPITKQRTAAVDRNCTATGCCVPKCFAEKGNRGFPGSPGPTGIRGLPGHEG 205
           V DP+   RT  VD +  A+     +C             GP G+ G+ G  G
Sbjct: 528 VLDPLKVVRTGLVDASGVASLMGTTECAIVDAPEESKAPAGPPGMGGMGGMPG 580


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 151 ISWQPWTHW 177
           +SW PWT+W
Sbjct: 201 LSWWPWTYW 209


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 53  DPITKQRTAAVDRNCTATG 109
           +PITKQ  AA+D   TA G
Sbjct: 652 NPITKQVKAALDETLTALG 670


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 8/40 (20%), Positives = 21/40 (52%)
 Frame = +3

Query: 51  TTPLRNNALLLWIAIAQRLVVVCQNVSQKRVTGDFLAALD 170
           TT ++  +   WI +++  +++C N+   +    F+  +D
Sbjct: 415 TTMMKTRSQPFWIIVSESCIILCDNMLSMQPADVFIWDVD 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,199
Number of Sequences: 5004
Number of extensions: 35407
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)