Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D15
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    25   5.4  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   7.2  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    25   7.2  

>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 251 FDSGRAKFSGISECQIHVSNLIQKAHIEVTEE 346
           FDS +A    + E +I   NLI K  +E TEE
Sbjct: 99  FDSLQAYNDYLEEVEILTFNLIYKIDVEETEE 130


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +2

Query: 71  TSTTVSSVIDNLKRVPLSSIFTLFAKH---TADEVIVQIPRFKIVSNINNLKELLTDMGL 241
           T  ++S V     +  +SSI  LF+KH    +D VIV   ++++VS ++ L  +   MG 
Sbjct: 479 TLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVS-LSLLFTVFRTMGG 537

Query: 242 KTM 250
            T+
Sbjct: 538 STV 540


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 191 IVSNINNLKELLTDMGLKTM-FDSGRAKFSGISECQIHVSNLIQK 322
           + S++ NL+E+L+++  KT+    G          ++H S+L+ K
Sbjct: 304 LTSDLENLREMLSELEQKTLDLKHGAPSLEEAVMSKMHESSLLSK 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,003,371
Number of Sequences: 5004
Number of extensions: 37648
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)