Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D15
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      85   3e-17
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      83   1e-16
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      81   6e-16
SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_13242| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013)                  28   4.2  
SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)                    28   5.6  
SB_51209| Best HMM Match : UBX (HMM E-Value=0.5)                       27   7.3  
SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_23681| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_2793| Best HMM Match : UBX (HMM E-Value=0.32)                       27   7.3  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 6/169 (3%)
 Frame = +2

Query: 2   EARVLELPYGDDNRYSMLLFLPYTSTTVSSVIDNLKRVPLSSIFTLFAKHTADEVIVQIP 181
           + ++LELPY D  + SM+L LP  +  ++    +L    ++ IF   +     +V V IP
Sbjct: 177 KCKLLELPYVD-TQLSMVLVLPDETEGLARFEQDLTHDKMTDIFNSVSSQRPADVEVYIP 235

Query: 182 RFKIVSNINNLKELLTDMGLKTMFDSGRAKFSGISECQIH--VSNLIQKAHIEVTEEGTX 355
           +FK+ S    L E L ++G+K MFD   A F+GIS    H  VS ++ KA +EV EEGT 
Sbjct: 236 KFKMTSEFK-LNEALQELGMKKMFDQAAADFTGISLPPEHLFVSAVLHKAFVEVNEEGTE 294

Query: 356 XXXXXXXXXXXKML----PDQFTANKPFLFMIVDRRMELALFTGAYSKP 490
                      +      P  F A+ PFLF+I   + +  LF G    P
Sbjct: 295 AAAATAAIMMMRCAIMREPLVFRADHPFLFLIQHCKSKCVLFMGRVMNP 343


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 3/167 (1%)
 Frame = +2

Query: 2   EARVLELPYGDDNRYSMLLFLPYTSTTVSSVIDNLKRVPLSSIFTLFAKHTADEVIVQIP 181
           + RV+ELPY  D+  +M++ LP   + + S+  ++    +     L    T +   V IP
Sbjct: 184 KCRVVELPYSGDDT-AMVIILPEEPSGIFSLEKSIDVEIMEKWRRLMINTTVE---VSIP 239

Query: 182 RFKIVSNINNLKELLTDMGLKTMFDSGRAKFSGISECQ-IHVSNLIQKAHIEVTEEGTXX 358
           +F++   +  L+ LL D+G+  +FDS +A  SGIS  + ++VS+ I KAHIEV E GT  
Sbjct: 240 KFRLSQKLE-LRSLLQDLGVSDIFDSRKADLSGISAAKGLYVSSAIHKAHIEVNERGTVA 298

Query: 359 XXXXXXXXXXKMLP--DQFTANKPFLFMIVDRRMELALFTGAYSKPT 493
                     + L   + F A+ PFLF I  +     LF G   +PT
Sbjct: 299 AATTGVVMAKRSLDMNEVFYADHPFLFSIHHKPSSAILFLGKVMQPT 345


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
 Frame = +2

Query: 8   RVLELPYGDDNRYSMLLFLPYTSTTVSSVIDNLKRVPLSSIFTLFAKHTADEVIVQIPRF 187
           +++ELPY  + + SM++ LP     +  +  +L +  L    T       +EV V +P+F
Sbjct: 216 QIVELPYAGE-KLSMVVLLPNEVDGLGKLESSLNKETLQEAMTSLRNSHPEEVEVTLPKF 274

Query: 188 KIVSNINNLKELLTDMGLKTMFDSGRAKFSGISECQIHVSNLIQKAHIEVTEEGTXXXXX 367
            +    + L E L  MG   +F  G+A  SGIS   + VS ++ KA +EV EEGT     
Sbjct: 275 TLTQEFS-LGETLKGMGASDLFSPGKADLSGISAAPLVVSEVVHKAFVEVNEEGTIAAAA 333

Query: 368 XXXXXXXKMLP--DQFTANKPFLFMIVDRRMELALFTGAYSKP 490
                    +P    F AN PFLF+I        LF G    P
Sbjct: 334 TGVGIMLMSMPMNPVFYANHPFLFLIRHNDTGAVLFMGRLVVP 376


>SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 24  LTAMTTGIRCCFSCHIRVPPCQVLLTT*NVC 116
           L+A+ T + C  S  + +P C+VLL+   +C
Sbjct: 427 LSAIMTAVTCTTSLSMGIPDCEVLLSAYKIC 457


>SB_13242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 185 FKIVSNINNLKELLTDMGLKTMFDSGRAKFSGISECQI 298
           FKIV  + + K+ L+ +GL    DSG AK  G SE ++
Sbjct: 60  FKIVGAVGSEKDKLSFVGLSRQIDSGLAK--GHSETEL 95


>SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
          Length = 994

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 185 FKIVSNINNLKELLTDMGLKTMFDSGRAKFSGISECQI 298
           FKIV  + + K+ L+ +GL    DSG AK  G SE ++
Sbjct: 131 FKIVGAVGSEKDKLSFVGLSRQIDSGLAK--GHSETEL 166


>SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)
          Length = 1082

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +2

Query: 161 EVIVQIPRFKIVSNINNLKELLTDMGLKTMFDSGRAKFSGISEC 292
           E++  I RF +V+  ++L+  LT++ L    + G+ K+S  S+C
Sbjct: 206 ELLDHIRRFGMVTADDSLQGSLTEISLDGDVNGGKRKYSTQSDC 249


>SB_51209| Best HMM Match : UBX (HMM E-Value=0.5)
          Length = 272

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 320 SVLNSKRESDIRKYLKTSRV 261
           +VLN KR+ ++ KYLKT+ V
Sbjct: 235 NVLNKKRQEELTKYLKTNIV 254


>SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 320 SVLNSKRESDIRKYLKTSRV 261
           +VLN KR+ ++ KYLKT+ V
Sbjct: 368 NVLNKKRQEELTKYLKTNIV 387


>SB_23681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 320 SVLNSKRESDIRKYLKTSRV 261
           +VLN KR+ ++ KYLKT+ V
Sbjct: 293 NVLNKKRQEELSKYLKTNIV 312


>SB_2793| Best HMM Match : UBX (HMM E-Value=0.32)
          Length = 311

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 320 SVLNSKRESDIRKYLKTSRV 261
           +VLN KR+ ++ KYLKT+ V
Sbjct: 255 NVLNKKRQEELTKYLKTNIV 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,471
Number of Sequences: 59808
Number of extensions: 266426
Number of successful extensions: 532
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)