Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D14
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family...    30   0.63 
At5g15060.1 68418.m01765 hypothetical protein                          28   2.5  
At3g42120.1 68416.m04325 hypothetical protein                          28   3.4  
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t...    27   4.4  
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei...    27   4.4  
At1g74520.1 68414.m08633 ABA-responsive protein (HVA22a) identic...    27   5.9  
At2g21110.1 68415.m02505 disease resistance-responsive family pr...    27   7.7  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    27   7.7  

>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
           protein identical to gi|4775268|emb|CAB42531
          Length = 150

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 140 KMYRILAILVLVGSAHAQANANDIDLEEINSIFKIPNQAPT-TTKKPTMTVSAPSAVP 310
           + + +L +L L  +    A+A     ++  S    P +APT TTK P+    AP+A P
Sbjct: 3   RQFVVLVLLTLTIATAFAADAPSASPKKSPSPTAAPTKAPTATTKAPSAPTKAPAAAP 60


>At5g15060.1 68418.m01765 hypothetical protein 
          Length = 245

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +2

Query: 164 LVLVGS--AHAQANANDIDLEEI 226
           L+LVGS  +HA AN ND++LE +
Sbjct: 170 LILVGSNLSHANANENDVNLEAL 192


>At3g42120.1 68416.m04325 hypothetical protein
          Length = 409

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +2

Query: 263 TTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVTIPRTTKK 439
           TT  P  TV++P+A   ++    R RY + P           + P TV  ++ PR +++
Sbjct: 284 TTDTPVTTVTSPTAPLLLDPPPKRLRYSSPPPKPPDFINKSLKFPKTVLRLSKPRVSRR 342


>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
           Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
           thaliana]
          Length = 917

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 305 VPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVN 409
           V  V  NG+ G  D D DDI  VFK  +    T N
Sbjct: 7   VKPVVPNGHDGYEDEDEDDIPLVFKRNSNTAATTN 41


>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 758

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 167 VLVGSAHAQANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYD 346
           V  G + A +   D D  EI  + K  N+   +T+KP +     +    V T+GN  R D
Sbjct: 373 VAQGGSDANSVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANTENRVATDGNSKRSD 432


>At1g74520.1 68414.m08633 ABA-responsive protein (HVA22a) identical
           to AtHVA22a [Arabidopsis thaliana] GI:4884932
          Length = 177

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 265 SCWCLIRYFENAVYFFEVYI 206
           +CW +I YF  A Y +E ++
Sbjct: 83  TCWLVIPYFSGAAYVYEHFV 102


>At2g21110.1 68415.m02505 disease resistance-responsive family
           protein similar to disease resistance response protein
           206-d [Pisum sativum] gi|508844|gb|AAB18669
          Length = 186

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 278 TMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNP 412
           T+T   PSA+        RG  D+ P    S+F +    P TV P
Sbjct: 46  TLTAPNPSAILIAKPTHTRGDNDSSPSPFGSLFAL--DDPLTVGP 88


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 260 TTTKKPTMTVSAPS-AVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVTIPRT 430
           +T K   + V+ PS  +P +       R  T+   ++SV+K+  + P  +  V  P T
Sbjct: 659 STPKTSVLDVNLPSITIPDLKDEVTLTRTVTNVGTVDSVYKVVVEPPLGIQVVVAPET 716


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,992,552
Number of Sequences: 28952
Number of extensions: 176755
Number of successful extensions: 520
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)