Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_D12
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 45 3e-05
04_03_0649 - 18402976-18403220,18403305-18404499 38 0.005
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159... 31 0.59
10_08_0009 + 14075929-14076789 29 2.4
03_02_0517 + 9054816-9055655 29 2.4
08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833... 28 5.5
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 7.3
02_05_1001 + 33423562-33424098 27 7.3
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032... 27 9.7
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184... 27 9.7
01_05_0197 + 19143582-19143618,19143814-19144523 27 9.7
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = +2
Query: 179 SFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDD 358
S +HL Y S I +T V+ + + +N+ + ++ L++G D+
Sbjct: 62 SLYSHLYYSSLSID-ETRCAVAPPSSGEESSILSNFSSSIKSSGGGFAVKTILSIGTDEF 120
Query: 359 TEDPQK--YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 487
ED ++ + R AF NS++ LA GFDG+DL+W+ P
Sbjct: 121 REDVSNAAFSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 365 DPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 487
DP + + P +R AF +A+ +A + GFDG+D++W+ P
Sbjct: 131 DPA-FAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFP 170
>08_01_0192 +
1594530-1594682,1594755-1594955,1595051-1595280,
1595596-1595766,1595902-1596007,1596339-1596545,
1596638-1596802
Length = 410
Score = 31.1 bits (67), Expect = 0.59
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 419 TNSALLLAEQYGFDGIDLSWQLPNRKPKKIRSSIGSFW 532
T +L+ E + FD L+W + R P +I++++ +W
Sbjct: 339 TKKMILVGEVFRFDLDTLTWSVIGRMPFRIKTALAGYW 376
>10_08_0009 + 14075929-14076789
Length = 286
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +2
Query: 266 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALL--- 436
D A+ + A+ K P L V L +GGD T N + A+ +A
Sbjct: 62 DTANLSPAAVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVS 119
Query: 437 -LAEQYGFDGIDLSWQ 481
L + YG DG+D+ ++
Sbjct: 120 GLIDAYGLDGVDVDYE 135
>03_02_0517 + 9054816-9055655
Length = 279
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 132 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 266
+++ H C+ W L S P+C LPA+ + + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198
>08_02_0992 +
23380855-23381195,23382464-23382506,23383306-23383371,
23384228-23384428,23384450-23384707,23384798-23385013,
23385148-23385321,23386151-23386312,23386594-23386635
Length = 500
Score = 27.9 bits (59), Expect = 5.5
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 197 LYKSAGIQADTYKMVSLNENLDIDRAHANYR-AITNLKRQFPQLRVFLTVGGDDDTE--D 367
L + Q Y+++S+NE D A YR AI N Q ++ V + E
Sbjct: 3 LSSNISTQKTHYEVLSVNEGATYDEVRAGYRAAILNAHPDKSQAKLDSLVSSVEHGEFFS 62
Query: 368 PQKYNLLLESPQARTAF 418
QK +L P++RT +
Sbjct: 63 VQKAWEVLRDPKSRTEY 79
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 257 LDIDRAHANYRAITNLKRQFPQLRVFL 337
+ +D ANYRA+ L + FP ++ F+
Sbjct: 2373 ITLDTPGANYRAVWALSKYFPNVKTFV 2399
>02_05_1001 + 33423562-33424098
Length = 178
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -3
Query: 276 CARSMSKFSLSETILYVSA--WMPADLYSRWVQNERA 172
CA S E + + S W PAD+ + WV ERA
Sbjct: 80 CALVHSHGPYGENLFHGSGVGWAPADVVAAWVSRERA 116
>12_02_0918 -
24299620-24299748,24299890-24300037,24303105-24303280,
24305870-24305917,24306005-24306116,24306209-24306468
Length = 290
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 269 RAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 376
RAH + + R+ RV VGG DD ED ++
Sbjct: 109 RAHPSLHVLVGWARRMIGFRVSTPVGGCDDEEDGRR 144
>08_01_1069 +
10916376-10916448,10917331-10918031,10918222-10918443,
10918526-10919351,10919437-10919574,10920431-10920569,
10920655-10920781,10921895-10921936,10922089-10922160,
10922491-10922589,10922694-10922735,10922947-10923027,
10923129-10923179,10923265-10923346,10923741-10923835,
10924739-10924810,10924907-10925023,10925176-10925244,
10925507-10925573,10925709-10925950
Length = 1118
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 410 TAFTNSALLLAEQYGFDGIDLSWQLPNRKPKKIRSSI 520
TAF S +L+ + D ID+ W +R PK+ R+ +
Sbjct: 300 TAFIRSNILMLNR---DEIDILWDAKDRFPKEFRAEV 333
>01_05_0197 + 19143582-19143618,19143814-19144523
Length = 248
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +2
Query: 98 VLCYYDSKSYIRES-------QARMLPTDLEPALSFCTHLLYKSAGIQADTYKM 238
+ +YD KS IR+ + ++ D+E + F HL+ +S G+ D +K+
Sbjct: 132 ITSHYDGKSGIRKHILEMTHMENQLRSMDMEISDGFLVHLIMRSLGLNYDPFKI 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,117,806
Number of Sequences: 37544
Number of extensions: 274275
Number of successful extensions: 815
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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