Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_D12
(542 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 56 2e-08
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 50 1e-06
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 46 1e-05
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 46 2e-05
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 45 4e-05
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 38 0.006
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 37 0.008
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 35 0.040
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 34 0.071
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR... 29 1.5
At1g23270.1 68414.m02911 hypothetical protein 29 2.0
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II... 29 2.7
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 28 3.5
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 3.5
At3g27220.1 68416.m03403 kelch repeat-containing protein contain... 28 3.5
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa... 28 3.5
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff... 28 3.5
At4g37110.1 68417.m05256 expressed protein 28 4.6
At4g15075.1 68417.m02316 hypothetical protein 28 4.6
At2g22650.1 68415.m02684 FAD-dependent oxidoreductase family pro... 28 4.6
At1g13540.1 68414.m01587 expressed protein 28 4.6
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 27 6.1
At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger) fa... 27 6.1
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 23 6.6
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 27 8.1
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 27 8.1
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 55.6 bits (128), Expect = 2e-08
Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Frame = +2
Query: 158 TDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVF 334
TD++ +L THL A ++A++Y++ N A + A T ++++ P ++
Sbjct: 21 TDIDSSLF--THLFCTFADLEAESYEITIATWN------QAPFHAFTETVQQRNPHVKTL 72
Query: 335 LTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPNRK 496
L++GG + +D + + +P +R +F S + +A YGF G+DL W+ P +
Sbjct: 73 LSIGGGNADKDA--FASMASNPDSRASFIQSTITVARSYGFHGLDLDWEYPRNE 124
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Frame = +2
Query: 158 TDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVF 334
TD++ +L THL A + + T ++ + N + T ++R+ P ++
Sbjct: 42 TDIDSSLF--THLFCAFADLNSQTNQVTVSSAN------QPKFSTFTQTVQRRNPSVKTL 93
Query: 335 LTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPN 490
L++GG D Y + +P +R +F +S++ +A YGF G+DL W+ P+
Sbjct: 94 LSIGGG--IADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPS 143
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 46.4 bits (105), Expect = 1e-05
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = +2
Query: 179 SFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVFLTVGGDD 355
S THL A I TY+++ + N + T ++R+ P ++ L++GGD
Sbjct: 45 SLFTHLFCAFADINTLTYQVIVSSRN------KPKFSTFTQTVRRRNPTVKTLLSIGGDF 98
Query: 356 DTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPN 490
+ + +P +R F +S++ LA GF G+DL+W+ P+
Sbjct: 99 TYNFA--FASMASNPTSRKLFISSSIKLARSCGFHGLDLNWKYPS 141
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 45.6 bits (103), Expect = 2e-05
Identities = 28/100 (28%), Positives = 51/100 (51%)
Frame = +2
Query: 188 THLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTED 367
THL A + T +V + ++ +N+ I +K++ P ++ L++GG + D
Sbjct: 39 THLFCAFADLDPQTNSVVVSGAH---EQEFSNFTKI--VKKKNPHVQTLLSIGGRN--AD 91
Query: 368 PQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 487
+ + +P +R +F SA+ A Y FDG+DL W+ P
Sbjct: 92 KSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWKYP 131
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 44.8 bits (101), Expect = 4e-05
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Frame = +2
Query: 77 SPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNEN 256
SPS++ K ++ E+Q + + P+ F THL A + A+++K+
Sbjct: 9 SPSAEVKASYWFPDG----ETQDPITSAETIPSALF-THLFCAFADLDANSHKVF----- 58
Query: 257 LDIDRAHAN-YRAITN-LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSA 430
+ +AH + T +K + PQ++ L++GG + + + + Q+R F +S
Sbjct: 59 --VSQAHEFIFSTFTETVKIRNPQVKTLLSIGGKNANNSA--FASMASNHQSRKTFIDSW 114
Query: 431 LLLAEQYGFDGIDLSWQLP 487
+ +A GF G+DL+W+ P
Sbjct: 115 IFIARSNGFHGLDLAWEYP 133
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 37.5 bits (83), Expect = 0.006
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Frame = +2
Query: 113 DSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRA 292
D KS E ++ P+ + F THL A + + T+++ N + +
Sbjct: 22 DGKSQSPECLSQGTPSSFIDSTLF-THLFCAFADVDSSTHEVTISAAN------SYQFSS 74
Query: 293 ITN-LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGID 469
T +K + ++ L++GG D D + + + R AF +S++ +A + F G+D
Sbjct: 75 FTETVKEKNTDVQTLLSIGGKD--ADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLD 132
Query: 470 LSWQLPN 490
L+W+ P+
Sbjct: 133 LAWEYPS 139
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 37.1 bits (82), Expect = 0.008
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 386 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 487
+ S R +F S + +A YGFDG+DL W+ P
Sbjct: 1 MASSSYGRKSFILSTISIARSYGFDGLDLDWEYP 34
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 34.7 bits (76), Expect = 0.040
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 386 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPN 490
++ + +R +F +S++ +A GF G+DL+W+ PN
Sbjct: 79 IVSNRTSRESFISSSISIARSLGFYGLDLAWEYPN 113
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 33.9 bits (74), Expect = 0.071
Identities = 17/63 (26%), Positives = 35/63 (55%)
Frame = +2
Query: 302 LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 481
+K + ++ L++GG D D + + + R AF +S++ +A + F G+DL+W+
Sbjct: 71 VKDKNTDVQTLLSIGGKD--ADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDLAWE 128
Query: 482 LPN 490
P+
Sbjct: 129 YPS 131
>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 401
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 75 HHLVAKAKSSATMTARAISEN-LKHVCCLRTWSLLFRSAPICCTNLPASKLT 227
H V K +AR + N + H C+ W + S P+C LPA LT
Sbjct: 200 HCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELPAEDLT 251
>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1036
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 180 RSAPICCTNLPASKLTHIKWFHSM 251
RS PIC T P+S +H KW H +
Sbjct: 13 RSCPICATPFPSSSSSH-KWTHQV 35
>At1g23270.1 68414.m02911 hypothetical protein
Length = 180
Score = 29.1 bits (62), Expect = 2.0
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Frame = -3
Query: 519 ILERIFFGFLFGNCQDRSIPSKPYCSARRRAEL-VKAVRACGDSNKRLYFCGSSVSSSPP 343
+LE++ G D ++P+ P RR L V + S K+L +S++S P
Sbjct: 25 VLEQVAKINCSGFTDDTALPTNPETRLRRLKSLPVSRTDSVSSSPKKLLSHSNSMASHPE 84
Query: 342 TVKNTRN*GNCLFKFVIAR*LACARSMSKFSLSETILYVSAWMPADLYSRWVQNERAGSK 163
K R + + F I +C S + ET ++ + SR E +GSK
Sbjct: 85 --KKYRGNVSSVSSFSIQVGKSCPLDSS---VEETQIFSKTKRNQSVKSRGGLGESSGSK 139
Query: 162 SVGS 151
+GS
Sbjct: 140 RIGS 143
>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
(IP5PII) nearly identical to inositol polyphosphate
5-phosphatase II [Arabidopsis thaliana] GI:10444263
isoform contains an AT-acceptor splice site at intron 6
Length = 613
Score = 28.7 bits (61), Expect = 2.7
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 9/140 (6%)
Frame = +2
Query: 131 RESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKR 310
R A P + A S +H++ ++ + AD ++ NE +D A + N
Sbjct: 201 RSHSAPSSPILAQEANSIISHVMVEN--LVADHSLDLATNEFIDAATALPSLEPQRNPNM 258
Query: 311 QFPQLRVFLT---VGGDDDTEDPQKYNLLL-----ESPQARTAFTNSALLLAEQYGFDGI 466
+P+L + VG + N L E+P + F + A L F+ +
Sbjct: 259 DWPELALDSNPQIVGSEGKLRRVFSSNATLGFKLPENPSGASRFASEARQLKRSRSFETL 318
Query: 467 DLSW-QLPNRKPKKIRSSIG 523
+LSW + KIR+S G
Sbjct: 319 NLSWNDIKEEDGDKIRNSYG 338
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P14714
Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 28.3 bits (60), Expect = 3.5
Identities = 24/89 (26%), Positives = 38/89 (42%)
Frame = -3
Query: 420 VKAVRACGDSNKRLYFCGSSVSSSPPTVKNTRN*GNCLFKFVIAR*LACARSMSKFSLSE 241
V ++R GD+ + ++ SS R G C+ VIAR A + M + L
Sbjct: 987 VSSMRLYGDNLRLQQILSETLLSSIRFTPALR--GLCVSFKVIARIEAIGKRMKRVELEF 1044
Query: 240 TILYVSAWMPADLYSRWVQNERAGSKSVG 154
I++ + +P DL Q R G+ G
Sbjct: 1045 RIIHPAPGLPEDLVREMFQPLRKGTSREG 1073
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 155 PTDLEPALSFCTHLLYKSAG 214
PTD P+LSFC +Y S G
Sbjct: 321 PTDPNPSLSFCPSNIYSSTG 340
>At3g27220.1 68416.m03403 kelch repeat-containing protein contains
Pfam PF01344: Kelch motif (4 repeats); contains Prosite
PS00334: Myb DNA-binding domain repeat signature 2;
similar to Male enhanced Antigen-1 (peas) (GI:20513270)
[Mus musculus]
Length = 426
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +2
Query: 419 TNSALLLAEQYGFDGIDLSWQLPNRKPKKIRSSIGSFWH 535
T +L+ E + F L+W + R P ++++++ FW+
Sbjct: 355 TKRLVLVGEIFRFQLDTLTWSVIGRLPYRVKTAMAGFWN 393
>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 423
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 144 HVCCLRTWSLLFRSAPICCTNLPASKLTH 230
HV C+ TW L + P+C +NL + +H
Sbjct: 150 HVECIDTWLLSHSTCPLCRSNLLSGFSSH 178
>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1065
Score = 28.3 bits (60), Expect = 3.5
Identities = 23/86 (26%), Positives = 38/86 (44%)
Frame = +2
Query: 194 LLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQ 373
LL+ +A A Y + + L ID A +++ Q P LR + VG +
Sbjct: 547 LLFSTASCSARLYTGTPI-QLLVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMV 605
Query: 374 KYNLLLESPQARTAFTNSALLLAEQY 451
+ + LE+ R+ F ALL ++Y
Sbjct: 606 ESQIALEAGFGRSLFERLALLGHKKY 631
>At4g37110.1 68417.m05256 expressed protein
Length = 417
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 239 PFYMCQLGCRQICTADGCRTKEQAPSP*AAY-VLEIL*YSSCCH 111
P ++C + CR IC CRTK+ AAY + L Y S H
Sbjct: 228 PDWICPV-CRDICNCSFCRTKKGWLPTGAAYRKIHKLGYKSVAH 270
>At4g15075.1 68417.m02316 hypothetical protein
Length = 168
Score = 27.9 bits (59), Expect = 4.6
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 138 LKHVCCLRTWSLLFRSAP 191
L++ CCL+T ++LF+S P
Sbjct: 126 LRNACCLKTATILFKSTP 143
>At2g22650.1 68415.m02684 FAD-dependent oxidoreductase family
protein
Length = 420
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 452 GFDGIDLSWQLPNRKPKKIRSSI 520
GF GI ++W L PK++R S+
Sbjct: 30 GFAGISVAWHLLKESPKELRLSV 52
>At1g13540.1 68414.m01587 expressed protein
Length = 381
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 320 QLRVFLTVGGDDDTEDPQKYNLLLESPQARTAF 418
+L V +GGDD T DP + +L+ P + +
Sbjct: 65 KLAVTFNIGGDDSTRDPVVFIPVLDKPLSSNCY 97
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 144 HVCCLRTWSLLFRSAPICCTNLPAS 218
HV C+ W L S P+C LP+S
Sbjct: 282 HVRCIVPWLELHSSCPVCRFELPSS 306
>At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 214
Score = 27.5 bits (58), Expect = 6.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 144 HVCCLRTWSLLFRSAPIC 197
H+CCL W L S P+C
Sbjct: 162 HLCCLDAWLKLNGSCPVC 179
>At5g42870.1 68418.m05225 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 930
Score = 23.0 bits (47), Expect(2) = 6.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 176 LSFCTHLLYKSAGIQADTYKMVSLNENLDIDR 271
LS C HLL S G+ A+ +E LD+++
Sbjct: 542 LSLCKHLL--SEGMGAEAASQAFNSEKLDMEK 571
Score = 22.6 bits (46), Expect(2) = 6.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 71 PASPSSQSKVLCYYDSKSYIRESQARMLPTDLE 169
P+ P SQS C+ SK +RE ++ D E
Sbjct: 486 PSQPLSQSFDPCFNTSKLDLREDESSSGGLDAE 518
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 372 CGSSVSSSPPTVKNTRN*GNCLF 304
CG S SSSP +V + +N CLF
Sbjct: 177 CGGSPSSSPASVLSNKNNRCCLF 199
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 24 SPSPGYWR*RLRLPTTQHHLV-AKAKSSATMTARAISENLKHVCCLRTWSLLFRSAPICC 200
SP+ G W + ++P+ H L+ S T+ ARA ++ + LL + C
Sbjct: 578 SPAAGMWFSKFKIPSPGHILIYGPPGSGKTILARAAAKYFE-----EQKDLLAHVILVSC 632
Query: 201 TNLPASKLTHI 233
+ L K+ HI
Sbjct: 633 STLALEKVQHI 643
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,187,433
Number of Sequences: 28952
Number of extensions: 218232
Number of successful extensions: 712
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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