Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_D11
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.31
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 29 0.54
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 1.2
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 2.9
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 26 2.9
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 2.9
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 3.8
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 5.0
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 25 6.7
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.8
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 25 8.8
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 25 8.8
>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 29.5 bits (63), Expect = 0.31
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 380 FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 273
F+ S IS ++N R Y+ I YCF Y++
Sbjct: 4 FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 28.7 bits (61), Expect = 0.54
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 119 ELIISILEYSLWVDVTGQCQGREGKYGYYNLHV 21
+L + L+ ++WV VT + G YGY LH+
Sbjct: 212 DLYSNNLKDAVWVAVTNYMKNLVGNYGYTELHI 244
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 1.2
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Frame = +3
Query: 102 NGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAI------- 260
N N Q A + + KN S++ S + L IAS +H+ + I
Sbjct: 59 NANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEW 118
Query: 261 -DFPNDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL 383
+ + ++ D+ +K+R + VDL+ K NEL
Sbjct: 119 AEIMKKDPNMSLMQDICEKIRKLDIVDLRAPKKPEKEAMNEL 160
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 2.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 2 KHESHRQHEDYNNHI 46
+H SHR+HE Y H+
Sbjct: 148 RHGSHRRHEPYRTHL 162
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 431 HFRIKHISGHNSKLII*FI 375
HF + H+ GH SKL F+
Sbjct: 72 HFHVSHVPGHASKLYFAFL 90
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 466 AASSFLPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPLIDLT 314
A +FL F FC + +N SLD + +YTL+ L P + +T
Sbjct: 289 ARLNFL-SFSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +3
Query: 270 NDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNL 440
ND + +A +DL QK+ L N ++ ++ D+F+ R + + NL
Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 5.0
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 369 NGNELNDQFAVVSRDVFNSEVQNLNFGKNE----EAANIINTWVEDHTNKR 509
NG ++ D VV VF + QN KNE EA+ T V D T +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASESAPTNVSDSTEPK 329
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 128 TCGELIISILEYSLWVDVTGQCQGREGKYGY 36
TCG L+I I LWV++T + +G G+
Sbjct: 22 TCGLLLIGIACNVLWVNMTARNILPKGNLGF 52
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 354 KVYIANGNELNDQFAVVSRDVFNSEVQNLNF 446
K+ + N+L ++ VV RD+ N ++ L+F
Sbjct: 102 KILLWKFNDLEEESEVVYRDISNQQIFALHF 132
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 24.6 bits (51), Expect = 8.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 448 VKMKKQLTLLILGLKTTPINV 510
+ + +QLT+L+ G+ +TPI V
Sbjct: 77 ISIYQQLTILLFGVLSTPITV 97
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 46 LPSRP*HWPVTSTHKEYSRME 108
+P RP HW T+T E RME
Sbjct: 110 IPRRP-HWDQTTTAVELDRME 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,928
Number of Sequences: 5004
Number of extensions: 34769
Number of successful extensions: 105
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -