Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D11
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310...    37   0.008
01_06_0824 - 32243495-32244319,32244449-32244859                       36   0.014
01_01_1152 + 9170628-9171899                                           32   0.24 
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    28   5.1  
02_05_1302 + 35567585-35567848,35568303-35568368,35568475-355685...    28   5.1  

>03_02_0834 -
           11630288-11630500,11630531-11630623,11630844-11631050,
           11631301-11633089,11633817-11634145
          Length = 876

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
 Frame = +3

Query: 231 ESHDELLKAIDFPNDNVTKAVFTDLNQKVRSI--KGVDLKLANKVYIANGNELNDQFAVV 404
           + HD LLK+    NDN+TK    + NQ +  +  KG D K  +KV        N+Q   +
Sbjct: 467 KEHDTLLKSSVELNDNLTKTA-EERNQILECLKEKGGDNKALHKVIARLQRISNEQEKTI 525

Query: 405 S--RDVFNSEVQNLNFGKNEEAANI 473
           +  R  FN+E++N + G +E  + +
Sbjct: 526 TGLRQGFNAELENKSLGTSESISRM 550


>01_06_0824 - 32243495-32244319,32244449-32244859
          Length = 411

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
 Frame = +3

Query: 159 DKSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPN--------DNVTKAVFTDLNQK 314
           DK++ +S  S+   LA L   + GE+ D+++  +             +V      D +  
Sbjct: 31  DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90

Query: 315 VRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNF-GKNEEAANIINTWVE 491
                G  ++ AN V++     L   +A V  D + +E + ++F  K EEA   IN W E
Sbjct: 91  GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150

Query: 492 DHTNKRI 512
             T  RI
Sbjct: 151 SATAGRI 157


>01_01_1152 + 9170628-9171899
          Length = 423

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
 Frame = +3

Query: 162 KSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPN-DNVTKAVFTDLNQKVRSIKGVD 338
           ++ I+S  S    LA +A  + GE+  ELL  +  P+   + ++  T L  ++R +   +
Sbjct: 59  RNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLP--N 116

Query: 339 LKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFG-KNEEAANIINTWVEDHT 500
              A  V++  G  L  +FA  +   + +  +  +F  + E+A   +N +V D T
Sbjct: 117 TSFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDAT 171


>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
            18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 478  LIMLAASSF--LPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLA 347
            L++L   SF  LP    C S L  SL+ T+N S  SLP  M  L A
Sbjct: 1121 LVILGCPSFSSLPASIRCLSNLK-SLELTSNNSLTSLPEGMQNLTA 1165


>02_05_1302 +
           35567585-35567848,35568303-35568368,35568475-35568573,
           35569028-35569061,35569147-35569246,35569738-35569813,
           35569974-35570315,35570426-35570569,35570840-35571073,
           35571149-35571212,35571297-35571340,35571431-35571601
          Length = 545

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 109 FPFLSTLCGSMSLANVKAA-RANMVIIIFMLSVTFVF 2
           FPFL T     + +N+KAA    +V ++F +SVT  F
Sbjct: 190 FPFLMTRACCEACSNLKAAFLVAVVFLLFCMSVTLYF 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,282,830
Number of Sequences: 37544
Number of extensions: 191494
Number of successful extensions: 493
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)