Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D11
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   0.80 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 0.80
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 235 DSPVEAIASWANG 197
           D  VEA+A WANG
Sbjct: 338 DKNVEALAKWANG 350


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +3

Query: 342 KLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKR 509
           KL  K      N  ND +     +  NS   ++ F +N+E    IN    D+ + +
Sbjct: 125 KLDQKFIFPQENNYNDNYFYSKSNGSNSSNSDVLFKQNKEEEQTINRKNSDYLDNQ 180


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 115 NSPHVCLMKSSRKTQI 162
           NSPH C  K+   T+I
Sbjct: 20  NSPHTCRTKNGDYTKI 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,236
Number of Sequences: 438
Number of extensions: 2354
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)