Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D10
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    31   0.14 
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   2.3  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   2.3  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   3.1  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   3.1  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    26   4.1  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   4.1  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   5.4  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   7.1  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   7.1  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    25   7.1  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   9.4  

>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = -1

Query: 192 QEPVAPQPVHTPTKLTGKG-SGSDQ------DMNGIDSPSRPADIMPLSQRTQKPRNSPA 34
           Q+P+ P  + + +  TG   SGS Q      D+N + S S  + + P+ Q  QKP N   
Sbjct: 90  QQPLIPTSIASSSAQTGDTFSGSSQSNFNTNDLNQMTSSSNLSTVTPIKQDHQKPMNLQG 149

Query: 33  F 31
           F
Sbjct: 150 F 150


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 120 PGRIPNPSPLTSLAY 164
           P  IPNPSPL S AY
Sbjct: 161 PSAIPNPSPLFSSAY 175


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 209 PSAPVAAPLYSAPPGYPGVQAHPGGG 286
           P+A + A +   P GYPG    P GG
Sbjct: 134 PNAGIPAAMPGMPSGYPGTVPIPQGG 159


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 213 DGCTSIFQEPVAPQPVHTPTKLTGKGSGSDQ-DMNGIDSPSRPAD 82
           D    I ++   P+  H+ ++ +G GS SD+ D +  +S S   D
Sbjct: 81  DDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSED 125


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = -1

Query: 192 QEPVAPQPVHTPTKLTGKGSGSDQDMNGIDSPSRPADIMPLSQRTQKPRNSP 37
           Q+  APQ    P      G+ S Q M+  D PS      P  QRT  P N+P
Sbjct: 288 QQKQAPQNAFFPNPQGNVGAQSLQSMSPQDQPSTQQQ-QP--QRTAAPPNNP 336


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 440 YIPWGGLEHGKPNY 481
           Y+ WGGLE  KP+Y
Sbjct: 72  YLYWGGLEGKKPHY 85


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = -1

Query: 129 SDQDMNGI---DSPSRPADIMPLSQRTQKPRNSP 37
           SD ++ G+   D+  +PA+ +PLS+R+  P  +P
Sbjct: 30  SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 131 PEPFPVNFVGVCTGWGATGSWKIEVQPSAPVAAPLYSAPPGYPGVQA 271
           P P  VN  G+    G  G   + + P  P   P     PGYPG+ A
Sbjct: 490 PIPAAVNGRGMPMVPGHNGP--MPMYPGMPTQFPAGGPAPGYPGMNA 534


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 162 TPTKLTGKGSGSDQDMNGIDSPSRP--ADIMPLSQRTQKPRN 43
           +P K++ K S + +++NGI+  + P   + +PL      P N
Sbjct: 519 SPVKVSTKNSNTTENLNGINESNMPMLQNGLPLRTSGDHPSN 560


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 135 SGSDQDMNGIDSPSRPADI-MPLSQRT 58
           SGS  D+  I+SP+ PA+   P + RT
Sbjct: 82  SGSSSDLLNIESPASPAEASSPFTVRT 108


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 144 PLTSLAYVPAGALPVLGKSKCNRPLQWL 227
           PLT    +P   LP+  K   + PL WL
Sbjct: 53  PLTGSDALPKALLPIGNKPMLHYPLYWL 80


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -3

Query: 211 RLHFDFPRTGSAPAGTYANEVNGEGFGIRPGY 116
           RL F  PRTG    G         GFG R G+
Sbjct: 437 RLDFSTPRTGGGSRGGRGGFGGRGGFGGRGGF 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,842
Number of Sequences: 5004
Number of extensions: 59232
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)