Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_D10
(534 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22350.1 68418.m02607 expressed protein 29 1.9
At1g17980.2 68414.m02224 nucleotidyltransferase family protein c... 29 1.9
At1g17980.1 68414.m02225 nucleotidyltransferase family protein c... 29 1.9
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 29 2.6
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 29 2.6
At1g26570.1 68414.m03237 UDP-glucose 6-dehydrogenase, putative s... 29 2.6
At2g26180.1 68415.m03144 calmodulin-binding family protein low s... 28 3.4
At1g67850.2 68414.m07746 expressed protein contains Pfam profile... 28 3.4
At1g67850.1 68414.m07745 expressed protein contains Pfam profile... 28 3.4
At5g39320.1 68418.m04761 UDP-glucose 6-dehydrogenase, putative v... 27 5.9
At5g07560.1 68418.m00866 glycine-rich protein (GRP20) oleosin; g... 27 5.9
At4g32850.6 68417.m04675 nucleotidyltransferase family protein c... 27 5.9
At4g32850.5 68417.m04674 nucleotidyltransferase family protein c... 27 5.9
At4g32850.4 68417.m04671 nucleotidyltransferase family protein c... 27 5.9
At4g32850.3 68417.m04673 nucleotidyltransferase family protein c... 27 5.9
At4g32850.2 68417.m04672 nucleotidyltransferase family protein c... 27 5.9
At4g32850.1 68417.m04676 nucleotidyltransferase family protein c... 27 5.9
At2g03340.1 68415.m00293 WRKY family transcription factor contai... 27 5.9
At3g60790.1 68416.m06800 F-box protein-related contains weak hit... 27 7.9
At2g28310.2 68415.m03438 expressed protein contains Pfam profile... 27 7.9
At2g28310.1 68415.m03437 expressed protein contains Pfam profile... 27 7.9
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 27 7.9
At1g30220.1 68414.m03697 sugar transporter family protein simila... 27 7.9
At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) near... 27 7.9
At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) near... 27 7.9
>At5g22350.1 68418.m02607 expressed protein
Length = 427
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Frame = +2
Query: 146 VNFVGVCTGWGATGSWKIEVQPSAPVAAPLYSAPPGY--PGVQAHPGGGAGIWADASXXX 319
+N + C T S+K + S + L P Y G + +P G W DA
Sbjct: 285 LNVLATCGSVRITLSYKTPAKVSRVIFKELGDNPKVYIWNGQEPNPYMGHLAWGDAFVVT 344
Query: 320 XXXXXXXXXXDCSGEPLYVARAQH 391
+G+P+YV A H
Sbjct: 345 ADSVSLISEACSTGKPVYVVGADH 368
>At1g17980.2 68414.m02224 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 586
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +3
Query: 39 VNSVVSGFVGIVALYLLVARVNQSHSYPGRIPN 137
V S VSGF+G + LLVAR+ Q YP +PN
Sbjct: 101 VYSNVSGFLGGINWALLVARICQ--LYPNALPN 131
>At1g17980.1 68414.m02225 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 713
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +3
Query: 39 VNSVVSGFVGIVALYLLVARVNQSHSYPGRIPN 137
V S VSGF+G + LLVAR+ Q YP +PN
Sbjct: 228 VYSNVSGFLGGINWALLVARICQ--LYPNALPN 258
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 41 EFRGFWVRWDSGIISAGREGESIPF----ISWSDPEP-FPVNFVGVCTGWGATGSWKIEV 205
EF+ +W+ G+IS G+ PF W DP+P V +VG+ + G + V
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGLSSWDKHVGYRNVSV 158
Query: 206 QP 211
P
Sbjct: 159 FP 160
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 41 EFRGFWVRWDSGIISAGREGESIPF----ISWSDPEP-FPVNFVGVCTGWGATGSWKIEV 205
EF+ +W+ G+IS G+ PF W DP+P V +VG+ + G + V
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGLSSWDKHVGYRNVSV 158
Query: 206 QP 211
P
Sbjct: 159 FP 160
>At1g26570.1 68414.m03237 UDP-glucose 6-dehydrogenase, putative
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 481
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -1
Query: 198 IFQEPVAPQPVHTPTKLTGKGSGSDQDMNGIDSPSRP-ADIMPLSQRTQKPRNSPAFKIE 22
+F+ + V+TPTK G G+G D+ +S +R AD+ S+ + P E
Sbjct: 76 VFESDIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSSKIVVEKSTVPVRTAE 135
Query: 21 GV 16
+
Sbjct: 136 AI 137
>At2g26180.1 68415.m03144 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 416
Score = 28.3 bits (60), Expect = 3.4
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Frame = +1
Query: 157 WRMYRLGRYRFLENR--SATVRSSGCSTVQRXXXXXXXXXXXXXXXXHLGRRFRWPGPTG 330
W+ +R G++R + S+TV S+ +TV R + FR G
Sbjct: 43 WKGFR-GKHRSDSDGVDSSTVYSAAVATVLRAPPKDFKAVREEWAAIRIQTAFR-----G 96
Query: 331 CSSRRARLFWRTIVRCQSATRGRNSARKIGAIARMCLYTM 450
+RRA + IVR Q+ RGR RK A+ C+ +
Sbjct: 97 FLARRALRALKGIVRLQALVRGR-QVRKQAAVTLRCMQAL 135
>At1g67850.2 68414.m07746 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 404
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -3
Query: 445 YIGTSVRWHQFSWQSCA--LVLRSGNVQWFSRTILPSDYCTRWD 320
Y G W +F W A + +R W+++ L D R+D
Sbjct: 169 YDGRVTEWDEFEWSKTAIHISVRKQTKWWYAKRFLHPDIVARYD 212
>At1g67850.1 68414.m07745 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 404
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -3
Query: 445 YIGTSVRWHQFSWQSCA--LVLRSGNVQWFSRTILPSDYCTRWD 320
Y G W +F W A + +R W+++ L D R+D
Sbjct: 169 YDGRVTEWDEFEWSKTAIHISVRKQTKWWYAKRFLHPDIVARYD 212
>At5g39320.1 68418.m04761 UDP-glucose 6-dehydrogenase, putative very
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 480
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 168 VHTPTKLTGKGSGSDQDMNGIDSPSR 91
V+TPTK TG G+G D+ +S +R
Sbjct: 86 VNTPTKTTGLGAGKAADLTYWESAAR 111
>At5g07560.1 68418.m00866 glycine-rich protein (GRP20) oleosin;
glycine-rich protein 20 (GRP20); similar to - Brassica
napus, PIR:S50195
Length = 153
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Frame = +2
Query: 71 SGIISAGREGES-IPFISWSDPE----PFPVNFVGVCTGWGATGSWKIEVQPSAPVAAPL 235
SG+++ G G S + + W + FP+ G GA + P+AP A P
Sbjct: 85 SGLMAGGTSGVSGLTILMWLYKKYTGRDFPIKIPGAAAAGGAAPAAPAAPAPAAPAAKPA 144
Query: 236 YSAPPGYPG 262
+ P PG
Sbjct: 145 -AKPAAKPG 152
>At4g32850.6 68417.m04675 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 745
Score = 27.5 bits (58), Expect = 5.9
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +3
Query: 39 VNSVVSGFVGIVALYLLVARVNQSHSYPGRIPN 137
V S V+GF+G V LLVARV Q YP IP+
Sbjct: 238 VYSNVTGFLGGVNWALLVARVCQ--LYPNAIPS 268
>At4g32850.5 68417.m04674 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 745
Score = 27.5 bits (58), Expect = 5.9
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +3
Query: 39 VNSVVSGFVGIVALYLLVARVNQSHSYPGRIPN 137
V S V+GF+G V LLVARV Q YP IP+
Sbjct: 238 VYSNVTGFLGGVNWALLVARVCQ--LYPNAIPS 268
>At4g32850.4 68417.m04671 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 730
Score = 27.5 bits (58), Expect = 5.9
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +3
Query: 39 VNSVVSGFVGIVALYLLVARVNQSHSYPGRIPN 137
V S V+GF+G V LLVARV Q YP IP+
Sbjct: 238 VYSNVTGFLGGVNWALLVARVCQ--LYPNAIPS 268
>At4g32850.3 68417.m04673 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 735
Score = 27.5 bits (58), Expect = 5.9
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +3
Query: 39 VNSVVSGFVGIVALYLLVARVNQSHSYPGRIPN 137
V S V+GF+G V LLVARV Q YP IP+
Sbjct: 238 VYSNVTGFLGGVNWALLVARVCQ--LYPNAIPS 268
>At4g32850.2 68417.m04672 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 738
Score = 27.5 bits (58), Expect = 5.9
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +3
Query: 39 VNSVVSGFVGIVALYLLVARVNQSHSYPGRIPN 137
V S V+GF+G V LLVARV Q YP IP+
Sbjct: 238 VYSNVTGFLGGVNWALLVARVCQ--LYPNAIPS 268
>At4g32850.1 68417.m04676 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 741
Score = 27.5 bits (58), Expect = 5.9
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +3
Query: 39 VNSVVSGFVGIVALYLLVARVNQSHSYPGRIPN 137
V S V+GF+G V LLVARV Q YP IP+
Sbjct: 238 VYSNVTGFLGGVNWALLVARVCQ--LYPNAIPS 268
>At2g03340.1 68415.m00293 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 513
Score = 27.5 bits (58), Expect = 5.9
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Frame = -1
Query: 240 LYSGAATGADGCTSIFQEPVAPQPVHTPTKLTGKGSGSDQDMNGIDSPSRPADIM---PL 70
L +GA VA TP G G GS D++ SRP +M P
Sbjct: 65 LLAGAMASPAAAAVAAAAVVATAHHQTPVSSVGDGGGSGGDVDPRFKQSRPTGLMITQPP 124
Query: 69 SQRTQKPRNSPAFKIEGVS 13
T P SPA ++ S
Sbjct: 125 GMFTVPPGLSPATLLDSPS 143
>At3g60790.1 68416.m06800 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 488
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 122 WSDPEPFPVNFVGVCTGW 175
W +PFP +F VCT W
Sbjct: 406 WDGEKPFPDDFFRVCTVW 423
>At2g28310.2 68415.m03438 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 374
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 445 YIGTSVRWHQFSWQSCALVL--RSGNVQWFSRTILPSDYCTRWD 320
Y G + W QF W A+ + R W+++ L D + ++
Sbjct: 149 YDGRTTEWDQFEWSKSAIHISTRKQTKWWYAKRFLHPDVVSAYE 192
>At2g28310.1 68415.m03437 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 374
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 445 YIGTSVRWHQFSWQSCALVL--RSGNVQWFSRTILPSDYCTRWD 320
Y G + W QF W A+ + R W+++ L D + ++
Sbjct: 149 YDGRTTEWDQFEWSKSAIHISTRKQTKWWYAKRFLHPDVVSAYE 192
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = -1
Query: 204 TSIFQEPVAPQPVHTPTKLTGKGSGSDQDMNGIDSPSRPADIMPLS-QRTQKPRNSPAFK 28
T I+ PV P PVH P T + +P+ I P Q+ P SP K
Sbjct: 278 TPIYSPPVKPPPVHKPPTPTYSPPVKSPPVQKPPTPTYSPPIKPPPVQKPPTPTYSPPIK 337
>At1g30220.1 68414.m03697 sugar transporter family protein similar
to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit)
[Homo sapiens]; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 580
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 104 SIPFISWSDPEPFPVNFVGVCTGWGATGSW 193
++P+I S E +P+ F G+C G AT +W
Sbjct: 473 TVPWIVNS--EIYPLRFRGICGGIAATANW 500
>At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 496
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 59 VRWDSGIISAGREGESIPFISWSDP 133
V WDS I REG +P I W P
Sbjct: 208 VDWDSLIDKVVREGAEVPEIEWCVP 232
>At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 490
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 59 VRWDSGIISAGREGESIPFISWSDP 133
V WDS I REG +P I W P
Sbjct: 208 VDWDSLIDKVVREGAEVPEIEWCVP 232
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,105,812
Number of Sequences: 28952
Number of extensions: 342474
Number of successful extensions: 1214
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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