Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_D09
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 34 0.014
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 34 0.014
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 34 0.014
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 34 0.014
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 34 0.014
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 34 0.014
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 34 0.014
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 34 0.014
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 34 0.014
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 34 0.014
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 34 0.014
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 31 0.096
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 31 0.13
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 28 0.89
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 26 3.6
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 25 8.3
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 8.3
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 KRKESMRYQVGDKVAILRTQYG---TCLKLKPKFLGPYRVIRIKGKDRYDVE 148
K +E +Q GD V + RT+ G KL P F GP+ V++ G + Y+++
Sbjct: 1185 KIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 KRKESMRYQVGDKVAILRTQYG---TCLKLKPKFLGPYRVIRIKGKDRYDVE 148
K +E +Q GD V + RT+ G KL P F GP+ V++ G + Y+++
Sbjct: 1185 KIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 KRKESMRYQVGDKVAILRTQYG---TCLKLKPKFLGPYRVIRIKGKDRYDVE 148
K +E +Q GD V + RT+ G KL P F GP+ V++ G + Y+++
Sbjct: 1185 KIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 KRKESMRYQVGDKVAILRTQYG---TCLKLKPKFLGPYRVIRIKGKDRYDVE 148
K +E +Q GD V + RT+ G KL P F GP+ V++ G + Y+++
Sbjct: 1185 KIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 KRKESMRYQVGDKVAILRTQYG---TCLKLKPKFLGPYRVIRIKGKDRYDVE 148
K +E +Q GD V + RT+ G KL P F GP+ V++ G + Y+++
Sbjct: 1185 KIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 KRKESMRYQVGDKVAILRTQYG---TCLKLKPKFLGPYRVIRIKGKDRYDVE 148
K +E +Q GD V + RT+ G KL P F GP+ V++ G + Y+++
Sbjct: 1185 KIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 KRKESMRYQVGDKVAILRTQYG---TCLKLKPKFLGPYRVIRIKGKDRYDVE 148
K +E +Q GD V + RT+ G KL P F GP+ V++ G + Y+++
Sbjct: 1185 KIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 KRKESMRYQVGDKVAILRTQYG---TCLKLKPKFLGPYRVIRIKGKDRYDVE 148
K +E +Q GD V + RT+ G KL P F GP+ V++ G + Y+++
Sbjct: 1185 KIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 KRKESMRYQVGDKVAILRTQYG---TCLKLKPKFLGPYRVIRIKGKDRYDVE 148
K +E +Q GD V + RT+ G KL P F GP+ V++ G + Y+++
Sbjct: 1185 KIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 KRKESMRYQVGDKVAILRTQYG---TCLKLKPKFLGPYRVIRIKGKDRYDVE 148
K +E +Q GD V + RT+ G KL P F GP+ V++ G + Y+++
Sbjct: 1185 KIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 KRKESMRYQVGDKVAILRTQYG---TCLKLKPKFLGPYRVIRIKGKDRYDVE 148
K +E +Q GD V + RT+ G KL P F GP+ V++ G + Y+++
Sbjct: 1185 KIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 31.5 bits (68), Expect = 0.096
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 302 SKDVTFLFVNFRMLDFVFNLPEARQDHRIAECRN-ERNVRLSERMQCERMDDGNKRIKKK 478
SKDV L L+ F + + I ECRN +R +R E Q + DD KRI+
Sbjct: 1965 SKDVRMLQKQISDLEASFAASDIERIKGIDECRNRDRTIRQLEA-QISKFDDDKKRIQSS 2023
Query: 479 EDR 487
R
Sbjct: 2024 VSR 2026
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 31.1 bits (67), Expect = 0.13
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +2
Query: 209 PW---PQDW*IPRRTW*VLYVCIRTVFAAAHDFLSKDV-TFLFVNFRMLDFVFNLPEARQ 376
PW P W +P T+ LY C F+ A F + T+ V + M F+F+L E
Sbjct: 157 PWYMIPLIW-VPCVTYGFLYACTGIPFSVAITFFIIGLFTWTLVEYTMHRFLFHLDEYTP 215
Query: 377 DHRI 388
DH I
Sbjct: 216 DHPI 219
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 28.3 bits (60), Expect = 0.89
Identities = 14/68 (20%), Positives = 27/68 (39%)
Frame = +2
Query: 335 RMLDFVFNLPEARQDHRIAECRNERNVRLSERMQCERMDDGNKRIKKKEDRTWRNGKCVG 514
R++ F+F+ Q + C +R++ + + + D + G+CVG
Sbjct: 543 RLIPFIFSSYSNSQSVPLLPCPTQRHLLFNTSSTDNTKELSMSASSENSDCPHKEGECVG 602
Query: 515 KICNEKIK 538
CN K
Sbjct: 603 SFCNINAK 610
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 302 SKDVTFLFVNFRMLDFVFNLPEARQDHRIAECRNERNVRLSERMQC 439
+ D FL+ FV++L IA C +R +R+ + +C
Sbjct: 202 TSDGEFLYELHGHTSFVYSLTYIHNQQLIASCGEDRTIRIWKGKEC 247
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 422 SERMQCERMDDGNKRIKKKEDRTWRNGKCVGKICNEKIKRFT--*EVSGLITTDI 580
S Q ER++ +KK ++ + + + NE+ K+F+ E +GL+ DI
Sbjct: 136 SRNRQKERLERRKAEMKKMSEQAELESEKMADLKNEEKKKFSKILEEAGLVAVDI 190
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 80 LKPKFLGPYRVIRIKGKDRYDVEKLSNSSE 169
LKPK L P + R+KG+ + + SN ++
Sbjct: 105 LKPKILFPSQKRRVKGRFTFPFSRRSNLAQ 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,102
Number of Sequences: 5004
Number of extensions: 44620
Number of successful extensions: 140
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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