Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D09
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17978| Best HMM Match : DUF1399 (HMM E-Value=10)                    32   0.30 
SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36)                   31   0.70 
SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_38634| Best HMM Match : DUF164 (HMM E-Value=0.6)                    30   1.2  
SB_49854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_50868| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_2391| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_17978| Best HMM Match : DUF1399 (HMM E-Value=10)
          Length = 328

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
 Frame = -3

Query: 260 HIKLTTYDVEFTNLEATVS-YYQLMLTCAL 174
           H++ TTYDV+ T+L++T+S +++  L C L
Sbjct: 296 HLQSTTYDVDITHLQSTISTFFRAGLPCLL 325


>SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36)
          Length = 924

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 68  TCLKLKPKFLGPYRVIRIKGKDRYDVEKLSNSSEGPARTST 190
           TC +LKP+F  P   + IK      +E+LS   +GP  TST
Sbjct: 608 TCAELKPQFYRPEASVLIKATQ--PMERLSIDFKGPLPTST 646


>SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 365 EARQDHRIAECRNERNVRLSERMQCERMDDGNKRIKKKEDRTWRNGK 505
           E RQ   +A C N     L   M C  + D NK I+K   +   N K
Sbjct: 513 EGRQHAHVAHCENALQAHLD--MACGTIRDNNKEIRKNNKKIRDNNK 557


>SB_38634| Best HMM Match : DUF164 (HMM E-Value=0.6)
          Length = 493

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 371 RQDHRIAECRNERNVRLSERMQCERMDDGNKRIK-KKEDRTWRNGKCVGK 517
           R+D    + R +R    +++ +C+R DD  K+ + K++D T +  +C  K
Sbjct: 381 RKDDATKQSRCKRKDDTTKQSRCKRTDDTTKQTRGKRKDNTTKQSRCKRK 430



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 371 RQDHRIAECRNERNVRLSERMQCERMDDGNKRIK-KKEDRTWRNGKC 508
           R+D      R++R     ++ +C+R DD  K+ + K++D T +  +C
Sbjct: 357 RKDDTTKHSRSKRKDDTIKQSRCKRKDDATKQSRCKRKDDTTKQSRC 403


>SB_49854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 221 LEATVSYYQLMLTCALAPLMNCSASLHHN 135
           L A+ + YQ  + C L PL+ C  S+H N
Sbjct: 89  LRASWALYQRRVACMLVPLLLCLRSIHGN 117


>SB_50868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +2

Query: 371 RQDHRIAECRNERNVRLSERMQCERMDDGNKRIKKKEDRTWRNGK 505
           RQ   +A C N     L   M C  + D NK I+K   +   N K
Sbjct: 437 RQHAHVAHCENALQAHLD--MACGTIRDNNKEIRKNNKKIRGNNK 479


>SB_2391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 287 QRQKLFEYRHIKLTTYDVEFTNLEATVSYYQLMLTCAL 174
           QR  +F    + +  +DVE   LE  + YYQ  L   L
Sbjct: 45  QRDNIFRSVEVLIYVFDVESRELEKDMHYYQSCLEAIL 82


>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1511

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 86  PKFLGPYRVIRIKGKDRYDVEKLSNSSEG 172
           PK + PY  + +K +D YDV   S+ S+G
Sbjct: 478 PKPVYPYENVELKHEDPYDVVANSDDSDG 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,840,961
Number of Sequences: 59808
Number of extensions: 310186
Number of successful extensions: 750
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)