Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D09
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1...    29   1.8  
At4g03570.1 68417.m00492 hypothetical protein                          29   1.8  
At3g49250.1 68416.m05382 expressed protein                             29   3.1  
At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal hydrolase-r...    29   3.1  
At5g64980.1 68418.m08173 expressed protein                             28   4.1  
At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative ...    28   4.1  
At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase, p...    28   4.1  
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi...    27   7.1  
At5g16900.1 68418.m01981 leucine-rich repeat protein kinase, put...    27   9.4  

>At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1)
           identical to male sterility 1 protein [Arabidopsis
           thaliana] gi|15554513|emb|CAC69663 PMID:11696184;
           contains Pfam profile PF00628: PHD-finger; identical to
           cDNA male sterility 1 protein (ms1 gene) GI:15554514
          Length = 672

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 386 IAECRNERNVRLSERMQCE---RMDDGNKRIKKKEDRTWRNGKCVGKICNEKIKR 541
           + +C  + + +  +R++CE     +DG + +       W++ +CVG   NE++ R
Sbjct: 600 VTKCYEDDDKKKDKRIECECGATEEDGERMVCCDICEVWQHTRCVGVQHNEEVPR 654


>At4g03570.1 68417.m00492 hypothetical protein 
          Length = 347

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 389 AECRNERNVRLSERMQCERMDDGNKRIKKKEDR 487
           A+C N R++    R +C R D   +R+  KE++
Sbjct: 152 AKCMNRRSIVRRRRCRCRRRDIVKRRVNDKEEK 184


>At3g49250.1 68416.m05382 expressed protein
          Length = 420

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 398 RNERNVRLSERMQCERMDDGNKRIKKKEDRTWRNGKCVGKICNEKIKR 541
           R+E NVR ++      MD+ ++  KK ++  W+  K +  I  E++ R
Sbjct: 341 RDEVNVRFAKPTASRTMDNYSEAEKKMKELKWKKEKTLEDIKREQVLR 388


>At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 359 LPEARQDHRIAECRNERNVR-LSERMQCERMDDGNKRIKKKEDRTWRNGKCVGKI 520
           L E  Q     EC     +  L +R++CER DDG + I    D  WR  +   KI
Sbjct: 348 LVETPQSICFLECDELNQILDLLKRIKCER-DDGTELISMATDSLWRRTQVKEKI 401


>At5g64980.1 68418.m08173 expressed protein
          Length = 344

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 119 IKGKDRYDVEKLSNSSEGPARTSTSADNMKPWPQDW*IPRRTW 247
           I+ + R + E   +SS+ P R  +S  +++PW  D+    R+W
Sbjct: 151 IRVQSRTNNELSGSSSKVPGRRRSSRKSVQPWSPDYSEKLRSW 193


>At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative
           similar to GT-2 factor [Arabidopsis thaliana GI:416490
          Length = 619

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 53  RTQYGTCLKLKPKFLGPYRVIRI-KGKDRYDVEKLS--NSSEGPARTSTSADNMKPWPQD 223
           R ++ T   L P+ L P+ ++ I K  + +  + L   N +  P ++   +D  K WP+D
Sbjct: 404 RRKFQTSSSLLPQTLTPHNLLTIDKSLEPFSTKTLKPKNQNPKPPKSDDKSDLGKRWPKD 463


>At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase,
           putative similar to laccase [Liriodendron
           tulipifera][GI:1621467]
          Length = 573

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -1

Query: 556 YFLSKSFNLFVTNFPDTFPVSP 491
           YF+ KS N+F+T+FP T P+ P
Sbjct: 411 YFVGKSKNVFMTDFP-TAPIIP 431


>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 656

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 154 QLLYIITILSFDPDNSIW 101
           + +YIIT + F+PD ++W
Sbjct: 564 EAMYIITSMPFEPDKTVW 581


>At5g16900.1 68418.m01981 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 866

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 293 DFLSKDVTFLFVNFRMLDFVFNLPEARQDHRIAECRNERNVRLSERMQCERMDDGNK 463
           +FL+   + LF+N    + V ++P+A  D +  +   E N +L     C     GNK
Sbjct: 456 EFLANMKSLLFINLSNNNLVGSIPQALLDRKNLKLEFEGNPKLCATGPC-NSSSGNK 511


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,814,420
Number of Sequences: 28952
Number of extensions: 225705
Number of successful extensions: 600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)