Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D07
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0033 + 27820563-27823482,27823593-27823996                       30   1.4  
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     28   4.1  
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    28   5.5  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    27   7.2  
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368           27   9.6  
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026...    27   9.6  
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187...    27   9.6  

>11_08_0033 + 27820563-27823482,27823593-27823996
          Length = 1107

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 49  GVTENVSLQDKRCRRSVCGAPEKGFIPFP 135
           GV  N++L+  R    +CG+P  G +P P
Sbjct: 709 GVFSNITLKSLRGNAGLCGSPRLGLLPCP 737


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 347 YAKDFETFYKSAAFARVHLNEGQFLYAYYIAV 442
           Y KD   FY  +   +  + EG+FL ++Y+ +
Sbjct: 697 YVKDSRLFYSFSESTKELVQEGEFLQSFYVQI 728


>06_03_0499 +
           21461608-21463427,21463517-21463627,21463867-21464143,
           21464265-21464353,21464508-21464595,21464698-21464907,
           21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 394 TSESGTLVEGFKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQF 248
           +S +G +   FK+ +++E   K   +   L  EDG++++  K  DS+ F
Sbjct: 599 SSSNGPVEREFKILNLLEFNSKRKRMSVILKDEDGQILLFCKGADSIIF 647


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 372 TRVPLSL-VCT*MRDSSCTHIILQLSSAMILMDSFYQLLMK 491
           T+ P S  V T +  S+CTH   QLSSA +L     +  +K
Sbjct: 65  TQCPCSFAVATSISSSTCTHFTPQLSSAHLLSSQLKEKELK 105


>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
          Length = 601

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 7   PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 150
           PS + A    + Q GV  +VSL+     ++   + +K + PF  C PS
Sbjct: 296 PSPTKAQSRGSPQLGVPLHVSLKTCSHPQNASSSGQKKYTPFEECYPS 343


>04_04_1392 +
           33201015-33201600,33202030-33202406,33202528-33202638,
           33202720-33202815,33202899-33203570
          Length = 613

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 322 SLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVID 206
           S FP  + E GE+ V GK+ D +       SF + V ++
Sbjct: 500 SKFPSAISESGEITVEGKVKDGIPHLTKVGSFQVDVSLE 538


>01_06_0006 -
           25517892-25517935,25518156-25518276,25518598-25518733,
           25519189-25519280,25519358-25519426,25519710-25519821,
           25519897-25520015,25520302-25520355,25520811-25520891,
           25520968-25521051,25521124-25521315,25521633-25521746,
           25521832-25521978,25522066-25522302,25522762-25522810,
           25522894-25523027,25523124-25523324,25523532-25523701,
           25523773-25523875,25524198-25524361,25525015-25525055,
           25525144-25525187
          Length = 835

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
 Frame = +2

Query: 86  VDAVFVERQKKVLSLFQDVDQVNVDDEYYK-------IGKDYDVEANIDNYTNKKAVEEF 244
           VD V+   Q+K + +++ +    +++  Y+       I K    E +   Y NK   +EF
Sbjct: 651 VDRVYRIGQEKNVIIYRLITSCTIEERIYEKQVSKEGIFKAATEERDFRRYINKLGYKEF 710

Query: 245 LKLYRIGY 268
           LKL  +G+
Sbjct: 711 LKLPEMGF 718


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,611,959
Number of Sequences: 37544
Number of extensions: 263156
Number of successful extensions: 610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)