Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D06
         (541 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.0  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   9.2  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 385 TSNRQFISNSRNMSVCEGSSVAVDI 311
           T+NR     S  + VCEG  V +D+
Sbjct: 166 TANRMIPGPS--IQVCEGDKVVIDV 188


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 385 TSNRQFISNSRNMSVCEGSSVAVDI 311
           T+NR     S  + VCEG  V +D+
Sbjct: 166 TANRMIPGPS--IQVCEGDKVVIDV 188


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 405 TTTMIYPRRRSRPEICPPFPIYHQ 476
           +T    P      E+ PPF  YH+
Sbjct: 6   STEKFLPTVLPHQEVPPPFGYYHE 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,577
Number of Sequences: 336
Number of extensions: 2769
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)