Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D06
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0129 + 18431820-18432224                                         30   1.4  
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42...    29   2.4  
11_06_0648 + 25873779-25874279,25874418-25875548                       28   4.1  

>01_05_0129 + 18431820-18432224
          Length = 134

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 426 RRRSRPEICPPFPIYHQPTLLVVVSNICSKEQD 524
           RRR RP   PP P  H P   V+V+   ++  D
Sbjct: 4   RRRQRPSSSPPLPPEHSPLPSVIVATARARTAD 36


>01_01_0056 +
           422141-422379,422524-422620,422697-422774,422871-422930,
           423019-423123,423743-423856,424145-424186,424380-424496,
           424568-424755,425502-425785,425869-425990,426118-426160,
           426265-426356,427331-427379,427623-427693,427793-427912,
           428586-428674,429266-429311,429926-429973
          Length = 667

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 440 SRTPSRINHGRCYETGSLYQQQTI 369
           SRTPS ++H   +E+G    QQTI
Sbjct: 16  SRTPSALHHNGAFESGEPSMQQTI 39


>11_06_0648 + 25873779-25874279,25874418-25875548
          Length = 543

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 135 VPGCAGKRVNLQLILMEPQVLWSRYR*LETKITSSVLLAPLISL 266
           V  C  K    QL++   Q    R+R ++++I S +LL P+ISL
Sbjct: 88  VLSCQDKSAVYQLVMARRQA--DRFRDVQSRIDSYLLLVPVISL 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,332,941
Number of Sequences: 37544
Number of extensions: 313721
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)