Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D06
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43990.2 68418.m05382 SET domain-containing protein identical...    33   0.16 
At5g43990.1 68418.m05383 SET domain-containing protein identical...    33   0.16 
At5g40480.1 68418.m04909 expressed protein ; expression supporte...    30   0.86 
At1g12120.1 68414.m01404 expressed protein contains Pfam domain ...    27   6.1  
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    27   8.0  

>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +2

Query: 131 TSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYD 310
           ++  V  +AGE    +DGT+  +    +    +HKL+A  +++    ++L ++ +G V  
Sbjct: 219 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 276

Query: 311 NVNRHGAT-LTNTHIPGI 361
           N++   AT  +N H+P +
Sbjct: 277 NLSFAPATGGSNPHLPSM 294


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +2

Query: 131 TSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYD 310
           ++  V  +AGE    +DGT+  +    +    +HKL+A  +++    ++L ++ +G V  
Sbjct: 196 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 253

Query: 311 NVNRHGAT-LTNTHIPGI 361
           N++   AT  +N H+P +
Sbjct: 254 NLSFAPATGGSNPHLPSM 271


>At5g40480.1 68418.m04909 expressed protein ; expression supported by
            MPSS
          Length = 1919

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 269  QIKLGAATAGLVYDNVNRHGATLTNTHIPGIGDKLSVAGKVNLFHNNDH 415
            Q K+       +Y  V+  G TLTN H+P  G K  V  + N F   +H
Sbjct: 1597 QTKVTVLFGNTIY--VDSPGETLTNVHVPAEGYKFPVKFRENKFAVTEH 1643


>At1g12120.1 68414.m01404 expressed protein contains Pfam domain
           PF05904: Plant protein of unknown function (DUF863)
          Length = 483

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = +2

Query: 257 DLTNQIKLGAATAGLVYDNVNRH--GATLTNTHIPGIGDKLSVAGKVNLFHNNDHDLSAK 430
           D  ++ ++G A  G  YD+  RH  G + TNT        +++    N+  +N+ ++  K
Sbjct: 347 DFPDKPEMGKAKPGCSYDSYERHTLGISETNTEEDFCVSSMALDELNNITRDNNKEIGLK 406

Query: 431 AFATRNMPTISH--LPSTNTV 487
               R M       LPS  ++
Sbjct: 407 LRRGRRMKNFQKEILPSLTSL 427


>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 389 VNLFHNNDHDLSAKAFATRNMPTISHL 469
           ++L + + H+L  KAF+   MP +SHL
Sbjct: 281 LDLSNRSIHNLVNKAFSVHEMPLLSHL 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,845,839
Number of Sequences: 28952
Number of extensions: 237317
Number of successful extensions: 614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)