Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D05
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    27   1.9  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    26   2.6  
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    26   2.6  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   3.4  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   3.4  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   4.5  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   7.8  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 19/81 (23%), Positives = 35/81 (43%)
 Frame = +1

Query: 61  YRLQRDNEDQSDSVESTELTRESVETSRKNGFNQVGIIETDMESQDSHLDRNRPVLDEPA 240
           Y  Q  N DQ+D+  S     +   + + +  NQ     +D  S +  L +  P   +  
Sbjct: 27  YTNQDPNSDQADNENSDAKAHQPQHSPQHSTENQGHTGTSDTSSLEMELSKLHPESKQRQ 86

Query: 241 APGHARQYKRDTGVESTGVSY 303
            P H+ +++R     ++ VSY
Sbjct: 87  LP-HSPEHERSRSPIASVVSY 106


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 97  SVESTELTRESVETSRKNGFNQVGIIETDMESQDSHLDRNR 219
           S ES   T  S  +SR+N  N     ETD E + S L+RNR
Sbjct: 448 SSESANGTSYSKGSSRRNSKN-----ETDEEKRKSFLERNR 483


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 215 IVQFLMSPPHPDMQDNTNV 271
           ++QF +SPP PDM++   V
Sbjct: 237 LIQFQLSPPKPDMENQVVV 255


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
 Frame = +1

Query: 151 GFN-QVGIIETDME-SQDSHLDR--NRPVLDEPAAP----GHARQYKRDTGVESTGVSYS 306
           GFN + GI+ +D+  ++D HL     R  L E A P    GH+   K    +   GV Y 
Sbjct: 259 GFNYREGIVLSDVVFNEDGHLRPLFYRISLTEMAVPFGAKGHSHHRKHAYDLGEYGVGYR 318

Query: 307 GGKLALNQGKKDIYKALEAD 366
              L+   G + +   ++AD
Sbjct: 319 TNPLSFTCGCEGVIHYMDAD 338


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 288 RFDPSITFVLSCMSGCGGLIKNWTIPVQVAV 196
           RF PS T  L  +SGCG L +   +P+Q  +
Sbjct: 212 RFAPSCTEDL--LSGCGELAEKHNLPIQTHI 240


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 79   NEDQSDSVESTELTRESVETSRKNGFNQVGIIETDMESQDSHLDRN 216
            +EDQSD+ ES   +++ V++         G  + D E + S L  N
Sbjct: 1330 SEDQSDTSESEVGSKDDVQSEEVENLESAG--DEDEEEEPSALQAN 1373


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 432 ITGAEAIISVRSVWKHYYLQI 370
           +  AEAI +V   WKH Y+ +
Sbjct: 133 LMSAEAICNVVETWKHLYVTL 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,278
Number of Sequences: 5004
Number of extensions: 41081
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)