Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_D05
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0044 + 12716841-12716883,12717630-12717702,12718935-127191... 32 0.28
01_06_1698 - 39264075-39264468,39264545-39264696,39264780-392648... 29 2.0
07_01_0031 + 251818-252867 28 3.4
07_03_1531 + 27515829-27516046,27516238-27516451,27517223-275173... 27 6.0
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 27 6.0
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 27 6.0
02_01_0480 + 3458251-3458631 27 6.0
05_05_0288 - 23870228-23870965,23871515-23871584,23871662-238717... 27 7.9
02_05_1179 + 34761054-34761198,34761293-34761447,34761541-347617... 27 7.9
02_05_1161 - 34583072-34583249,34583363-34583715,34583820-345840... 27 7.9
>11_04_0044 +
12716841-12716883,12717630-12717702,12718935-12719104,
12719996-12720316,12720999-12721195
Length = 267
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 79 NEDQSDSVESTELTRESVETS-RKNGFNQVGIIETDMESQDSHLDRNRPVLDEPA 240
++D+S + ST+++ E V+TS R + + +I D E Q H+ ++RP D PA
Sbjct: 116 HQDKSSTHSSTDVSMEEVDTSPRLLDDSNLDLIG-DREMQGYHMLKDRPFADTPA 169
>01_06_1698 -
39264075-39264468,39264545-39264696,39264780-39264830,
39264946-39265122,39265256-39265348,39265489-39265555,
39265695-39265768,39266007-39266088,39266182-39266255,
39266354-39266383,39266475-39266534,39267524-39268225
Length = 651
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 358 EADMDLKIVMLPDGPHGNNCFCT 426
E D+DLK +M P PH N CF T
Sbjct: 629 EMDLDLKKMMDPQAPH-NRCFIT 650
>07_01_0031 + 251818-252867
Length = 349
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 433 YHRCRSNYFR-AVRLEALLSSDPCLLPTP 350
+ R S+YFR VR ALL SD CL+ P
Sbjct: 269 FTRFDSSYFRQVVRRRALLRSDACLMDHP 297
>07_03_1531 +
27515829-27516046,27516238-27516451,27517223-27517327,
27517432-27517830
Length = 311
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 205 LDRNRPVLDEPAAPGHARQYKRDTGVESTGVSYSGGKLALNQGKKDIYKA 354
L+ N P P PG + R T + G+ + GG L L G++ + +A
Sbjct: 232 LESNMPPPPSPQQPGWVTAHARVTDADPGGLVFKGGSL-LGSGQQYLGRA 280
>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +1
Query: 172 IETDMESQDSHLDRNRPVLDEPAAP 246
+E + ++D H + P+++EPA+P
Sbjct: 1544 LEGSIHARDVHANNTNPIIEEPASP 1568
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +1
Query: 172 IETDMESQDSHLDRNRPVLDEPAAP 246
+E + ++D H + P+++EPA+P
Sbjct: 1550 LEGSIHARDVHANNTNPIIEEPASP 1574
>02_01_0480 + 3458251-3458631
Length = 126
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 269 RLYCLACPGAAGSSRTGRFLSKWLS*DSMSVSIIPT*LKP 150
R++ PGA R R +++WL + + ++PT L P
Sbjct: 16 RMHRFLRPGALARLRDSRIVARWLRSAAAATRLLPTSLPP 55
>05_05_0288 -
23870228-23870965,23871515-23871584,23871662-23871749,
23871825-23871882,23871963-23872039,23872111-23872258
Length = 392
Score = 27.1 bits (57), Expect = 7.9
Identities = 25/86 (29%), Positives = 37/86 (43%)
Frame = +1
Query: 70 QRDNEDQSDSVESTELTRESVETSRKNGFNQVGIIETDMESQDSHLDRNRPVLDEPAAPG 249
Q + SDS TE+ E + T +KNG G T S ++ + LDEP+
Sbjct: 292 QYHKSEGSDS--DTEVLHEYI-TPQKNG----GGSTTSSTSGSKEINVEKLYLDEPSCKR 344
Query: 250 HARQYKRDTGVESTGVSYSGGKLALN 327
Y+R++ + SG L LN
Sbjct: 345 QTVDYQRESKLLDFDQQSSGKNLDLN 370
>02_05_1179 +
34761054-34761198,34761293-34761447,34761541-34761723,
34761825-34762177,34762288-34762451,34762837-34762930,
34763898-34763958
Length = 384
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 261 LSCMSGCGGLIKNWTIPVQVAVLRFHVR 178
L C++G GG I +W + ++ + +HVR
Sbjct: 16 LVCVTGAGGFIGSWVVK-ELLIRGYHVR 42
>02_05_1161 -
34583072-34583249,34583363-34583715,34583820-34584002,
34584096-34584250,34584346-34584493
Length = 338
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 261 LSCMSGCGGLIKNWTIPVQVAVLRFHVR 178
L C++G GG I +W + ++ + +HVR
Sbjct: 17 LVCVTGAGGFIGSWVVK-ELLIRGYHVR 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.132 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,821,730
Number of Sequences: 37544
Number of extensions: 271318
Number of successful extensions: 657
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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