Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_D05
(481 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32940| Best HMM Match : EGF (HMM E-Value=0) 30 0.86
SB_36993| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24) 29 2.0
SB_52134| Best HMM Match : C1_1 (HMM E-Value=1.8) 29 2.6
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92) 28 3.5
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_28587| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-25) 27 6.1
SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7) 27 6.1
SB_19951| Best HMM Match : SNF (HMM E-Value=0) 27 6.1
SB_7260| Best HMM Match : PAN (HMM E-Value=0.00036) 27 6.1
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065) 27 8.0
SB_1691| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_32940| Best HMM Match : EGF (HMM E-Value=0)
Length = 1025
Score = 30.3 bits (65), Expect = 0.86
Identities = 14/52 (26%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 82 EDQSDSVESTE-LTRESVETSRKNGFNQVGIIETDMESQDSHLDRNRPVLDE 234
E++ ++ E+TE L +S + + +NG+++ + E+++ S+D +R DE
Sbjct: 970 EEEIENKETTEGLDTQSADDASENGYSESSVAESELISEDMDTQSDRMDNDE 1021
>SB_36993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +1
Query: 73 RDNEDQSDSVESTELTRESVETSRKNGFNQVGIIETDMESQDSHLDRNRPVLDEPAAPGH 252
RD +D++ + E TR+S + + ++ ++ D ++DSH + R DE H
Sbjct: 68 RDGQDEATRDGNDEATRDSHDEATRDSQDEAARDGHDEATRDSHDEATRDGHDEATRDSH 127
Query: 253 ARQYKRDTGVESTGVSY 303
+ RD E+T S+
Sbjct: 128 -DEATRDGNDEATRDSH 143
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +1
Query: 73 RDNEDQSDSVESTELTRESVETSRKNGFNQVGIIETDMESQDSHLDRNRPVLDEPAAPGH 252
RD D++ E TR+ + + ++ ++ D ++D H + R DE GH
Sbjct: 60 RDTHDEATRDGQDEATRDGNDEATRDSHDEATRDSQDEAARDGHDEATRDSHDEATRDGH 119
Query: 253 ARQYKRDTGVEST 291
+ RD+ E+T
Sbjct: 120 -DEATRDSHDEAT 131
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +1
Query: 73 RDNEDQSDSVESTELTRESVETSRKNGFNQVGIIETDMESQDSHLDRNRPVLDEPAAPGH 252
RD D++ + TR++ + + ++G ++ D ++DSH + R DE A GH
Sbjct: 48 RDGHDEA----TRNATRDTHDEATRDGQDEATRDGNDEATRDSHDEATRDSQDEAARDGH 103
Query: 253 ARQYKRDTGVEST 291
+ RD+ E+T
Sbjct: 104 -DEATRDSHDEAT 115
>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
Length = 1669
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 250 VRVRRAHQELDDSCPSGCLEIPCP 179
++ RR DD CP IPCP
Sbjct: 1557 LKARRGESSSDDGCPGNPTSIPCP 1580
>SB_52134| Best HMM Match : C1_1 (HMM E-Value=1.8)
Length = 154
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 61 YRLQRDNEDQSDSVESTELTRESVETSRKNGFNQ 162
YR +RDN +S LTR++ T RK N+
Sbjct: 89 YRKKRDNRANQLITQSDPLTRQTASTVRKKAINR 122
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 211 CPSGC-LEIPCPFQLFQPD 158
CPSG +E+PCP F PD
Sbjct: 1744 CPSGTPIEVPCPTGTFSPD 1762
>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
Length = 806
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 79 NEDQSDSVESTELTRESVETSRKNGFNQVGIIETDMESQDSHLDRNRPVLDEPA 240
++ S +STE+T +V +S N G++ T+ + L++ RP EPA
Sbjct: 346 SDSASTVTQSTEVTASTVASSAANA----GVVLTETQFATKSLNKIRPSCKEPA 395
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 20 KSHILHERQEQQDRIDFNEIMKISLTVLSRQ 112
KSH+ E E + + NEI+K+ L L ++
Sbjct: 1534 KSHLAEEEMENEKLVKENEILKVELEQLKKE 1564
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 115 LTRESVETSRK-NGFNQVGIIETDMESQDSHLDRNRPVLDEPAAPGHARQYKRD 273
L RE E RK N ++ I++ ++ D + + + +D AAP + + K+D
Sbjct: 432 LPREEEEYFRKINDLSKTSILDDPLDDSDRSVRKRKLEIDFRAAPSRSPKSKKD 485
>SB_28587| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-25)
Length = 346
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 439 CCYHRCRSNYFRAVRLEALLSSDPCLLPTPCIY 341
C Y C YF++ L+A L + P PC +
Sbjct: 207 CTYENCGKTYFKSSHLKAHLRTHTGEKPFPCTW 239
>SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)
Length = 348
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 445 ERCCYHRCRSNYFRAVRLEALLSSDPCLLPTPCIYPFYLDSMQV 314
ERC Y C+ + RLE D C L +PC P YL S ++
Sbjct: 254 ERCTY--CKHPF----RLELEGKHDKCYLNSPCRQPGYLMSKKI 291
>SB_19951| Best HMM Match : SNF (HMM E-Value=0)
Length = 359
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 273 ITFVLSCMSGCGGLIKNWTIPVQVAVLRFHVRFNYSNLIETI 148
+ V+ MS C + K T+P + L F+++ N+S L + I
Sbjct: 58 VVVVVVTMSSCRSMHKGLTLPGAMKGLSFYLKPNFSKLGDAI 99
>SB_7260| Best HMM Match : PAN (HMM E-Value=0.00036)
Length = 161
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 346 YKALEADMDLKIVMLPDGPHGNNCFCTCDSN 438
Y D+DL+ + + PHG C +CDS+
Sbjct: 110 YSYYGPDLDLQSAVCDNCPHGTFCVESCDSD 140
>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
Length = 1033
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 173 LKRTWNLKTATWTGIVQFLMSPPHPDMQDNTN 268
L+ +L A WT ++ L SP P + NTN
Sbjct: 83 LEELGDLVLADWTSVINTLYSPIEPFVFSNTN 114
>SB_1691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 27.1 bits (57), Expect = 8.0
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Frame = -2
Query: 450 FGSAVAITGAEAIISVRSVWKHYYLQIHVCFQRLVYILFTLIQCKFSTRVTDSSRFDPSI 271
FG+ I E ++ S W H +++HVC + + ++F +FST + R D
Sbjct: 139 FGAKYCIMADE--VTDISNWAHLGIKVHVCLYKKILLVFHR-YFEFSTGIAVRYRKDDKP 195
Query: 270 TFVL----SCMSGCGGLIKNWTI 214
L SC S G I N I
Sbjct: 196 VERLLGFESCSSITGEAISNTII 218
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.132 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,836,401
Number of Sequences: 59808
Number of extensions: 314773
Number of successful extensions: 789
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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