Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D05
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   0.74 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   5.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.1  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +1

Query: 70  QRDNEDQSDSVESTELTRESVETSRKNGFNQVGIIETDMESQDSHL 207
           ++DN +   +    +L + SV    KNG  +  I + D+ + ++H+
Sbjct: 414 EKDNNEIVTAQFLNQLKKSSVLVHTKNGRLKYQISDNDISTNETHI 459


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -2

Query: 438 VAITGAEAIISVRSVWKHYYLQIHVCFQRLVYILFTL 328
           V  T  E  +   S    + +Q+H CFQ +  + F +
Sbjct: 28  VECTMVEKRVLALSTKPPFLVQLHSCFQTMDRLYFVM 64


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 105 VDRINPGVRRNIQKKWFQSGWNN*NGHGI 191
           VD++ P +   I   W+Q    N   HGI
Sbjct: 26  VDKVPPDMLHLIDANWYQYPPLNPMWHGI 54


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +1

Query: 166 GIIETDMESQDSHLDRNRPVLDEPAAPGHARQYKR 270
           G+I+ +   +  HL  +   L   A   H R Y++
Sbjct: 131 GLIKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQ 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,356
Number of Sequences: 438
Number of extensions: 2820
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)