Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D05
         (481 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16210.1 68418.m01894 HEAT repeat-containing protein contains...    30   0.93 
At3g12320.1 68416.m01536 expressed protein                             28   3.7  
At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma su...    28   3.7  
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    27   5.0  
At3g55370.2 68416.m06150 Dof-type zinc finger domain-containing ...    27   5.0  
At3g55370.1 68416.m06149 Dof-type zinc finger domain-containing ...    27   5.0  
At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family p...    27   5.0  
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O...    27   5.0  
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O...    27   5.0  
At3g17400.1 68416.m02223 F-box family protein contains Pfam prof...    27   6.5  
At2g23093.1 68415.m02754 expressed protein                             27   6.5  
At1g33940.1 68414.m04206 hypothetical protein                          27   6.5  
At4g36860.2 68417.m05227 LIM domain-containing protein low simil...    27   8.7  
At3g10020.1 68416.m01202 expressed protein                             27   8.7  
At1g06910.1 68414.m00734 myb family transcription factor contain...    27   8.7  

>At5g16210.1 68418.m01894 HEAT repeat-containing protein contains
           Pfam profile PF02985: HEAT repeat
          Length = 1180

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
 Frame = +1

Query: 73  RDNEDQSDSVESTELTRESVETSRKNGFNQVGIIETDMESQDSHL-DRNRPVLDEPAAPG 249
           ++NE     +E     ++ +  S++N   Q+G      ES    L DR + V     +  
Sbjct: 220 QENESLKKEIERLSKEKDGLLKSKENFEEQIGAFNKSTESLQKDLRDREKQVQSLKQSSE 279

Query: 250 HARQYKRDTGVESTGV------SYSGGKLALNQG 333
           H R+   D   E T +      S +G  ++LN+G
Sbjct: 280 HQRRNLNDCRAEITSLKMHIEGSRAGQYVSLNEG 313


>At3g12320.1 68416.m01536 expressed protein
          Length = 269

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 61  YRLQRDNEDQSDSVESTELTRESVETSRKN-GFNQVGIIETDMESQDSHLDR 213
           YRL R ++D+SDSV S       ++TSR + G       E ++ES+ + +DR
Sbjct: 195 YRLARSSQDKSDSV-SPNSEELLMQTSRYDYGDGNRFSREEEIESETNSIDR 245


>At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma
           subunit family protein contains Pfam profile PF04189:
           Eukaryotic initiation factor 3, gamma subunit
          Length = 446

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 73  RDNEDQSDSVESTELTRESVETSRKNGFNQVGIIE 177
           RDN +  D+ E+  LT E +E  R+ G     IIE
Sbjct: 103 RDNREIVDNNEAQNLTGEEIEAMRREGAKGDEIIE 137


>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -2

Query: 333 TLIQCKFSTRVTDSSRFDPSITFVLSCMSGCGGLIKNWTIPVQVAVLRFHVRFNYS 166
           TL+Q + S R+T+S   +P    VL    G   +      P+Q A L F+   N+S
Sbjct: 164 TLVQKQLSFRLTESLFGEPFFFEVLKFPGGITVIPPQPIFPLQKAQLLFNFTLNFS 219


>At3g55370.2 68416.m06150 Dof-type zinc finger domain-containing
           protein
          Length = 354

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 273 ITFVLSCMSGCGGLIKNWTIPVQVAVLRFHVRFNYSNLIET 151
           I+ ++S MS  GG++  W IP      +F    N + L+++
Sbjct: 203 ISNMISGMSSSGGILDAWRIPPSQQAQQFPFLINTTGLVQS 243


>At3g55370.1 68416.m06149 Dof-type zinc finger domain-containing
           protein
          Length = 323

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 273 ITFVLSCMSGCGGLIKNWTIPVQVAVLRFHVRFNYSNLIET 151
           I+ ++S MS  GG++  W IP      +F    N + L+++
Sbjct: 203 ISNMISGMSSSGGILDAWRIPPSQQAQQFPFLINTTGLVQS 243


>At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 223

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 82  EDQSDSVESTELTRESVETSRKNGFNQVGIIETDMESQDSHLD 210
           ED+    E++  T E +  SRKN  + +   E D E +D  L+
Sbjct: 4   EDEMKKGEASGETSEKMGLSRKNSGSSLSPTEDDEEDEDKKLE 46


>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
           SP|O14617 Adapter-related protein complex 3 delta 1
           subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 869

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 459 FN*FGSAVAITGAEAIISVRSVWKHYYLQIHVCFQRLVYILFT 331
           F   GS+ +    +AI  V  V++ Y+  + VCF+RLV  L T
Sbjct: 152 FTLLGSSKSFVKKKAIGVVLRVFEKYHDAVKVCFKRLVENLET 194


>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
           SP|O14617 Adapter-related protein complex 3 delta 1
           subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 869

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 459 FN*FGSAVAITGAEAIISVRSVWKHYYLQIHVCFQRLVYILFT 331
           F   GS+ +    +AI  V  V++ Y+  + VCF+RLV  L T
Sbjct: 152 FTLLGSSKSFVKKKAIGVVLRVFEKYHDAVKVCFKRLVENLET 194


>At3g17400.1 68416.m02223 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 185

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 288 YWSQLLWWK-TCIESR*KGYIQGVG--SRHGSEDSNASR 395
           YW Q LW+K T +      Y+  +G   R G+ D+  SR
Sbjct: 127 YWGQTLWFKPTSLRHFPHWYMYAIGYQMRRGNRDAKTSR 165


>At2g23093.1 68415.m02754 expressed protein
          Length = 449

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 240 GGLIKNWTIPVQVAVLRFHVRFNYSNLIE 154
           GG+I    +P   A+L F ++  YSN IE
Sbjct: 385 GGMISLSQVPANAAILFFLIQRGYSNKIE 413


>At1g33940.1 68414.m04206 hypothetical protein
          Length = 497

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
 Frame = +1

Query: 85  DQSDSVESTELTRESVETSRKNGFNQVGIIETDM--------------ESQDSHLDRNRP 222
           D+S+  E+T   +E    S+  G  + G+I +++              E++D H +++ P
Sbjct: 15  DESEGTENTSCAQEERVMSQNEGHRRQGVISSNVPDENSSANEIPTSGEARDCHAEQSEP 74

Query: 223 VLDEPAAPGHAR-QYKRDTGVESTG 294
            +D  AAP  A  Q K   G E +G
Sbjct: 75  -MDVSAAPLSASPQLKTHRGREISG 98


>At4g36860.2 68417.m05227 LIM domain-containing protein low
           similarity to LIM-domain protein [Branchiostoma
           floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
           GI:7209525; contains Pfam profile PF00412: LIM domain
          Length = 547

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 278 PVSRLYCLACPGAAGSSRTGRFLSKWLS*DSMSVSI 171
           P S   C+ C    G    GRFLS W++   ++VS+
Sbjct: 184 PSSHRICVGCQAEIGH---GRFLSAWVAFGILNVSV 216


>At3g10020.1 68416.m01202 expressed protein
          Length = 149

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +1

Query: 64  RLQRDNEDQSDSVESTELTRESVETSRKNGFNQVGIIETDMESQDSHLDRNRPVLDEPAA 243
           R +  NE+   SV+  E+   + ET +     +  ++E  ++  D H     P+   P+ 
Sbjct: 16  RAEHKNEEGRKSVDKFEVKTRNPETIKSV---ERKLMEKGVQRMDRHPSDGIPLRRPPSK 72

Query: 244 PGHARQY 264
            GH  +Y
Sbjct: 73  SGHGGKY 79


>At1g06910.1 68414.m00734 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 390

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
 Frame = +1

Query: 67  LQRDNEDQSDSVESTELTR--ESVETSRKNGFNQVGIIETDME--SQDSHLDRNRPVLDE 234
           L+  N D+SD +ES+E +   ES+  +R+   NQ       ME   Q+S LD     L+ 
Sbjct: 148 LENLNMDESDEIESSEESEETESMVEAREGVGNQNSQASEAMEEDDQESLLDTE---LER 204

Query: 235 PAAPGHARQYKRDTGVESTGVSYSGGKLALNQGKKDIYKALE 360
           P + G    Y                   L   K ++ KALE
Sbjct: 205 PTSGGSKAVYVPSQFNPIPSAVVDRALRKLRASKIELMKALE 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,339,377
Number of Sequences: 28952
Number of extensions: 218420
Number of successful extensions: 507
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)