Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D04
         (216 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    23   5.5  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    23   7.2  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    22   9.6  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    22   9.6  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    22   9.6  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +2

Query: 92  VLFVVLLS----LMCVVQCKIYCRSSFITTNMARKS 187
           ++F++L      L CV+  K+Y R+S+   N+  +S
Sbjct: 159 IIFIILRDGTGFLQCVLSGKVYDRASYDFINLGPES 194


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 34  KSHHSFDIYY*FCKNEG 84
           K    FDIY+ FCK  G
Sbjct: 277 KGSSVFDIYHAFCKEVG 293


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 65  NFVKMKVAPVLFVVLLSLMCVVQ 133
           NF+++  A  +F V+L   C VQ
Sbjct: 135 NFLQLMFAAYVFSVVLCTFCYVQ 157


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 14  SVSDRSLNRITHSIYTINFVKMKVAPVLF 100
           + S + L R+TH   TI  V M    VLF
Sbjct: 388 NASGKELVRVTHVFVTIFAVCMGALAVLF 416


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 146 NKSYIARHTLRIEEQQTKLVQPSF 75
           N+ YI+  T  +EE  TK+++  +
Sbjct: 386 NQKYISEQTQLVEEALTKVMKEKY 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 836,564
Number of Sequences: 5004
Number of extensions: 13423
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)