Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D04
         (216 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0446 - 17221514-17221626,17221960-17222035,17222381-172225...    26   3.6  
07_03_0940 + 22762176-22762345,22763207-22763252                       25   8.3  
02_05_0361 + 28285994-28286063,28286341-28286393,28286528-282865...    25   8.3  

>08_02_0446 -
           17221514-17221626,17221960-17222035,17222381-17222536,
           17222645-17222723,17223858-17224087,17224938-17225076,
           17225158-17225220,17226198-17226279,17226366-17226444,
           17227046-17227225,17227331-17227590,17227704-17227806,
           17227915-17228058,17228148-17228246
          Length = 600

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 158 SLTYNKSYIARHTLRIEEQQTKLVQPSFL 72
           S++YN  Y+   T RIE+++ K   P FL
Sbjct: 159 SISYNNRYVQSETFRIEKERQK---PCFL 184


>07_03_0940 + 22762176-22762345,22763207-22763252
          Length = 71

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 79  EGCTSFVCCSSILNVC 126
           EGC + +CC  +L++C
Sbjct: 55  EGCCAALCCCCLLDMC 70


>02_05_0361 +
           28285994-28286063,28286341-28286393,28286528-28286588,
           28286825-28287912
          Length = 423

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 41  ITHSIYTINFVKMKVAPVLFVVLLSLMCVVQCKIYCRSSF-ITTNM 175
           I+H  Y + F+    A   + ++LSLM V   K+  R +F +  NM
Sbjct: 246 ISHGKYILGFLLTLGASATYSLILSLMQVTFEKVIKRETFSVVLNM 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,919,281
Number of Sequences: 37544
Number of extensions: 70099
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)