Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D04
         (216 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54544| Best HMM Match : Colicin_im (HMM E-Value=1.7)                27   2.3  
SB_29506| Best HMM Match : 7tm_1 (HMM E-Value=0.46)                    27   2.3  
SB_26153| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)                    27   3.1  
SB_18896| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_54544| Best HMM Match : Colicin_im (HMM E-Value=1.7)
          Length = 163

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = +2

Query: 35  NRITHSIYTINFVKMKVAPVLFVVLLSLMCVVQCKIYCRSSFITTNMARKS 187
           +++T  I+ I++V     P+L+ V L        K+ CR + +   + +++
Sbjct: 96  SKVTSIIFPISYVNAAFGPILYFVFLEDFRTALRKLLCRRTTVEAEVNQET 146


>SB_29506| Best HMM Match : 7tm_1 (HMM E-Value=0.46)
          Length = 194

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = +2

Query: 35  NRITHSIYTINFVKMKVAPVLFVVLLSLMCVVQCKIYCRSSFITTNMARKS 187
           +++T  I+ I++V     P+L+ V L        K+ CR + +   + +++
Sbjct: 127 SKVTSIIFPISYVNAAFGPILYFVFLEDFRTALRKLLCRRTTVEAEVNQET 177


>SB_26153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 83  VAPVLFVVLLSLMCVVQCKIYCRSSFITTNMARKSRLQCHPI 208
           VA + +++ L +M     ++Y   +FI T     S   C+PI
Sbjct: 193 VAFLSYIIPLCIMVFCYLRVYITEAFIFTGFMASSHSVCNPI 234


>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
          Length = 475

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 17  VSDRSLNRITHSIYTINFVKMKVAPVLFVVLLSLMCVVQCKIYC 148
           + DR L+  +  +  I FV  K+   L   LLS   VV CKI C
Sbjct: 225 LQDRLLSARSVVVCKIRFVVCKIRCCLQDWLLSARSVVVCKIRC 268


>SB_18896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 192 NLLFLAILVVIKLDLQ*ILHCTTHIKDRRTTNKT 91
           ++LF+ + VVIK+  +    C    +DR  +N T
Sbjct: 152 SVLFVLLAVVIKVTRERRAQCDVEARDRNASNAT 185


>SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 68  FVKMKVAPVLFVVLLSLMCVVQCKIYCR 151
           F  + VA + FV+  +LMC    KIY +
Sbjct: 175 FASLAVALLFFVLPFALMCFFYLKIYLK 202


>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 158 SLTYNKSYIARHTLRIEEQQTKLVQ 84
           SLT + S +A HTL  E+ Q K +Q
Sbjct: 895 SLTQDSSPLAGHTLSTEDFQNKYLQ 919


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,166,838
Number of Sequences: 59808
Number of extensions: 92923
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 16,821,457
effective HSP length: 50
effective length of database: 13,831,057
effective search space used: 290452197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)