Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D04
         (216 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf (diva...    29   0.59 
U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf (diva...    29   0.59 
AF016423-2|AAB65323.2|   92|Caenorhabditis elegans Hypothetical ...    25   7.3  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    25   9.7  
X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    25   9.7  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    25   9.7  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    25   9.7  

>U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           a protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 17  VSDRSLNRITHSIYTINFVK-MKVAPVLFVVLLSLMCVVQCKI 142
           +SD   +R+    Y I  +  +  A VLFV+ L+L C+V C+I
Sbjct: 478 ISDYVFSRLGSEWYIIMVLAPITFAYVLFVLYLALYCLVSCEI 520


>U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           b protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 17  VSDRSLNRITHSIYTINFVK-MKVAPVLFVVLLSLMCVVQCKI 142
           +SD   +R+    Y I  +  +  A VLFV+ L+L C+V C+I
Sbjct: 392 ISDYVFSRLGSEWYIIMVLAPITFAYVLFVLYLALYCLVSCEI 434


>AF016423-2|AAB65323.2|   92|Caenorhabditis elegans Hypothetical
           protein F40A3.4 protein.
          Length = 92

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 74  KMKVAPVLFVVLLSLMCV-VQCKIYCRSSFITTNMARKSRLQCHPIE 211
           +M VA +L V+ L ++ V + C  +CR +         S  + HPIE
Sbjct: 45  RMVVALLLIVIALIIIAVFLICFFHCRRANNEERSPLHSNRKSHPIE 91


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 134 CKIYCRSSFITTNMARKSRLQCHPI 208
           C+  C+SS + T  +  + LQC PI
Sbjct: 306 CQNQCQSSCMNTCQSSATVLQCQPI 330


>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 132 CTTHIKDRRTTNKTGATFIFTKLIVYIE*VMRFSE 28
           CTT I+D R   K     +  +L  YIE V RF E
Sbjct: 40  CTTQIRDAREREKREIGLLNDRLADYIEKV-RFLE 73


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform a protein.
          Length = 1128

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 132 CTTHIKDRRTTNKTGATFIFTKLIVYIE*VMRFSE 28
           CTT I+D R   K     +  +L  YIE V RF E
Sbjct: 666 CTTQIRDAREREKREIGLLNDRLADYIEKV-RFLE 699


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform b protein.
          Length = 1248

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 132 CTTHIKDRRTTNKTGATFIFTKLIVYIE*VMRFSE 28
           CTT I+D R   K     +  +L  YIE V RF E
Sbjct: 666 CTTQIRDAREREKREIGLLNDRLADYIEKV-RFLE 699


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,624,382
Number of Sequences: 27780
Number of extensions: 75612
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)