Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D04
         (216 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07680.1 68415.m00992 ABC transporter family protein                27   2.2  
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c...    26   3.9  
At5g61350.1 68418.m07698 protein kinase family protein contains ...    25   5.2  
At5g67600.1 68418.m08524 expressed protein                             25   9.0  
At3g49840.1 68416.m05449 proline-rich family protein contains pr...    25   9.0  
At2g41420.1 68415.m05111 proline-rich family protein contains pr...    25   9.0  

>At2g07680.1 68415.m00992 ABC transporter family protein 
          Length = 1194

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 8   DQSVSDRSLNRITHSIYTINFVKMKVAPVLFVVLLSLMCVVQCKIYCRSSFI 163
           DQ+ S R LNR +  +YTI+     +  +L    + L+ ++    Y +  F+
Sbjct: 726 DQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVLSYVQVLFL 777


>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
           contains Pfam profile PF01040: UbiA prenyltransferase
           family
          Length = 954

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 70  CKNEGCTSFVCCSSILN 120
           C+NEGCT+  C + + N
Sbjct: 195 CENEGCTAVFCANQMEN 211


>At5g61350.1 68418.m07698 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 842

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 97  QNWCNLHFYKIN-SIYRMSDAI**TITDRLV 8
           ++W  LHFY +N  +Y +++++    TD  V
Sbjct: 109 RHWIRLHFYPLNHPLYNLTNSVFSVTTDTTV 139


>At5g67600.1 68418.m08524 expressed protein
          Length = 82

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 79  EGCTSFVCCSSILNVC 126
           EGC + +CC  +L+ C
Sbjct: 66  EGCLAALCCCCLLDAC 81


>At3g49840.1 68416.m05449 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 606

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 79  EGCTSFVCCSSILNVC 126
           EGC + +CC  +L  C
Sbjct: 590 EGCLAMLCCCVLLEAC 605


>At2g41420.1 68415.m05111 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 98

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 79  EGCTSFVCCSSILNVC 126
           EGC + +CC  +L+ C
Sbjct: 82  EGCLAALCCCCLLDAC 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,220,043
Number of Sequences: 28952
Number of extensions: 64254
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,070,560
effective HSP length: 51
effective length of database: 10,594,008
effective search space used: 211880160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)