Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_D03
(504 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 29 0.40
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 27 1.2
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 27 1.6
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 2.8
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 26 3.7
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 26 3.7
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 4.9
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 6.5
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 25 8.5
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 8.5
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 25 8.5
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 29.1 bits (62), Expect = 0.40
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -2
Query: 263 IVCKIEELRPSFQASYNAPYRCACHSSGRCDGQVVAFIHAKVRELLA-RCSQFHVQLLNC 87
+V LRP Q ++ PY ++ G Q VA ++ + ++A R S H +L +
Sbjct: 315 LVTPAGRLRPHGQPNFEVPYTAYIYTRGSITKQPVACLNGFKKPVIAVRFSPIHYELNSF 374
Query: 86 PLESFIVCSF 57
SF SF
Sbjct: 375 SNFSFTSVSF 384
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 375 KNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLG 488
K +D + + VL WH + +Q + + + ELS LG
Sbjct: 111 KLLDFLQVQEKGVLAWHFIPNQEYNCYVKNKTELSFLG 148
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 1.6
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +3
Query: 309 RYAHRGLLLDTSRH--YLSLSKI--LKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPEL 476
+Y + ++LD H Y LS + D + + + H+H+ S PY +K
Sbjct: 56 QYKGKTVMLDAGVHPAYTGLSALPFFDEFDLSTVDVLLISHFHLDHVASLPYVMQKTNFR 115
Query: 477 SRLGAYHPT 503
R+ HPT
Sbjct: 116 GRVFMTHPT 124
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 209 GRYKRLGNLVATLLSYKRFQGIA 277
G + LGN+VAT SY FQG A
Sbjct: 305 GSFLVLGNVVATKGSYNTFQGEA 327
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 3.7
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = -2
Query: 470 GKLFTVIRKTLIIDDMPMEYVHFIR 396
G ++ ++KT+IIDD ++Y+ ++
Sbjct: 164 GTMYAFLKKTVIIDDSYLQYLSTVK 188
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 291 DIYDYPRYAHRGLLLDTSRH 350
D YDYPRY+ R L++ RH
Sbjct: 189 DYYDYPRYSER-KSLNSKRH 207
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 4.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +3
Query: 276 RINSTDIYDYPRYAHRGLLLDTSRHY 353
R+NS+D++ RY R + L+ ++++
Sbjct: 357 RMNSSDLFSKARYVRRAIQLEFNKNF 382
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 144 QSKGASRTVQSVPRATPELSLGIVHRLQLHHPNSCTDFLNS 22
+ K +S + SVP A + +G+ + L N+ ++ LNS
Sbjct: 775 EDKLSSHLLDSVPNALRQAPIGLKNTNNLSERNASSNLLNS 815
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 8.5
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1
Query: 304 TLDTLTGDSCWTHPGTI 354
T++ L GD+ W+H G +
Sbjct: 224 TMEVLLGDATWSHTGLV 240
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1
Query: 387 HRYSLVSSITINS 349
HRYSLV S+T++S
Sbjct: 332 HRYSLVESVTLSS 344
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 78 FQGTVQELHVELTAPCEKLP 137
F+GT E+H+ L A LP
Sbjct: 150 FEGTAAEMHIALNAVLSSLP 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,032
Number of Sequences: 5004
Number of extensions: 39994
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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