Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D03
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   3e-22
SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)        64   5e-11
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              62   3e-10
SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              60   1e-09
SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              39   0.003
SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.18 
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)                   28   3.8  
SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)             28   5.0  
SB_27962| Best HMM Match : Clathrin (HMM E-Value=4.1)                  28   5.0  
SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)               27   6.6  
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score =  101 bits (242), Expect = 3e-22
 Identities = 47/91 (51%), Positives = 62/91 (68%)
 Frame = +3

Query: 225 LETWSQLFYLTNDFRELRINSTDIYDYPRYAHRGLLLDTSRHYLSLSKILKNIDAMAANK 404
           LET+SQ+ + + D          I DYPR+ HR  ++DTSRHYL LS I K +DAM+  K
Sbjct: 244 LETFSQIVHQSEDGMYYA-KGNKIEDYPRFHHRAFMIDTSRHYLKLSIIKKFLDAMSYAK 302

Query: 405 MNVLHWHIVDDQSFPYHSEKFPELSRLGAYH 497
            NVLHWH+VDDQSFP+ S+ FP LS  G+++
Sbjct: 303 FNVLHWHVVDDQSFPFQSQTFPSLSDQGSFN 333


>SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)
          Length = 228

 Score = 64.5 bits (150), Expect = 5e-11
 Identities = 34/85 (40%), Positives = 49/85 (57%)
 Frame = +3

Query: 222 GLETWSQLFYLTNDFRELRINSTDIYDYPRYAHRGLLLDTSRHYLSLSKILKNIDAMAAN 401
           G+ET+SQL    +    L   S  I D P + HRGL+LDT R +  +  +   +DAM+  
Sbjct: 27  GMETFSQLVVDGS----LVYTSVSISDKPSFVHRGLMLDTGRRFFPMDLLYNTLDAMSYV 82

Query: 402 KMNVLHWHIVDDQSFPYHSEKFPEL 476
           K+NVLH+H+ D   F   S+ FP+L
Sbjct: 83  KLNVLHFHLSDLCRFSVESKLFPDL 107


>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 1788

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 33/94 (35%), Positives = 53/94 (56%)
 Frame = +3

Query: 210  GVIRGLETWSQLFYLTNDFRELRINSTDIYDYPRYAHRGLLLDTSRHYLSLSKILKNIDA 389
            GV  G++T   L  L +  +E  +    I D PRY +RG+ LD  R+++  + +LK +DA
Sbjct: 1085 GVFYGVQT---LIALAD--KENTVPMVTIKDAPRYGYRGMHLDVGRNFMEKAAVLKLLDA 1139

Query: 390  MAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGA 491
            MA  KMN  H+H+ DD+ +        EL+ +G+
Sbjct: 1140 MATYKMNKFHFHLTDDEGWRLEIPGLEELTTVGS 1173


>SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 804

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 27/66 (40%), Positives = 42/66 (63%)
 Frame = +3

Query: 294 IYDYPRYAHRGLLLDTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPE 473
           I D PR+ +RG+ +D  R+++  S+ILK IDA +  K+N LH H+ DD+ +       PE
Sbjct: 328 IRDAPRFEYRGMEIDLGRNFMPKSEILKLIDATSMYKLNKLHLHLTDDEGWRLEIPGLPE 387

Query: 474 LSRLGA 491
           L+ LG+
Sbjct: 388 LTTLGS 393


>SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 296

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 405 MNVLHWHIVDDQSFPYHSEKFPELSRLGA 491
           MNV HWH+ DDQ F   S+ +P+L  L +
Sbjct: 1   MNVFHWHLTDDQGFRIESKVYPKLHELAS 29


>SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 925

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 288 TDIYDYPRYAHRGLLLDTSRHYL-SLSKILKNIDAMAANKMNVLHWHIVDDQSFPYH 455
           + I D+P   HRG+LLD S   +  +  ++  +D +++ K+N L  ++ +  +F  H
Sbjct: 461 SQISDWPDVKHRGILLDVSTGRVPKMETLMSLVDILSSAKVNQLQLYMQNTFAFEGH 517


>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1675

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 176 CDGQVVAFIHAKVRELLARCSQFHVQLLNCPLESFIVCSFIIQTPVLTS 30
           C   VVAF+ + +R L+  C    V  L CPL   ++  F +    L S
Sbjct: 179 CFSVVVAFLLSPLRVLVLPCFSVVVAFLLCPLRVIVLPCFSVVVAFLLS 227


>SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)
          Length = 359

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -2

Query: 257 CKIEELRPSFQASYNAPYRCACHSSGRCDGQVVAFIHAKVRELLA 123
           CK + +   FQ S+ A Y+     S R  G ++ FIHAK+  LLA
Sbjct: 204 CKEKMMNVIFQTSWKAEYKI---KSTR--GDLLTFIHAKIYLLLA 243


>SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = -2

Query: 236 PSFQASYNAPYRCACHSSGRCDGQVVAFIHAKVRELLARCSQFHVQ--LLN----CPLES 75
           PSF+ASY +  +C+C+++          +  K  +++  C    VQ  LL+    CPL S
Sbjct: 247 PSFRASYQSSMQCSCYNNNL---PAKCSMPCKDPQVIDLCGDIAVQQRLLSRQDPCPLHS 303

Query: 74  FIVCSFI-IQTPVLTS 30
               S I I+ P++ S
Sbjct: 304 LSDTSGISIRQPIVES 319


>SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)
          Length = 583

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +3

Query: 234 WSQLFYL-TNDFR---ELRINSTDIYDYPRYAHRGLLLDTSRHYLSLSKILKNIDAMAAN 401
           W+   YL T  F+   E R+N T++  Y   + +GL+L+    Y      L N   +AA+
Sbjct: 216 WTMSQYLPTGGFKWMTEKRMNETNLVKYGDDSKKGLILEVDLEYPKHLHDLHNDYPLAAD 275

Query: 402 KMNV 413
            +NV
Sbjct: 276 WVNV 279


>SB_27962| Best HMM Match : Clathrin (HMM E-Value=4.1)
          Length = 255

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 498 DDKLRVDLVRETFHCDKENSDHRRYANGVRSFYSRPWHRYSLVSSI 361
           D +L   LV    H   +  DHR YA+ V +F   P H + L +S+
Sbjct: 199 DHRLYASLVEAFNHSSLQ--DHRLYASLVEAFNHSPLHDHRLYASL 242


>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
          Length = 1486

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 45   SLDDEAANDERFQGTVQELHVELTA 119
            SLD   + DE  +G V E+HVE+ A
Sbjct: 1326 SLDTRKSRDEESRGHVTEIHVEVKA 1350


>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 209  GRYKRLGNLVATLLSYKRFQGIAYQ 283
            GRY  +G  +ATL+S + F  +AY+
Sbjct: 1061 GRYHEVGRAMATLMSDEIFHEVAYK 1085


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,356,803
Number of Sequences: 59808
Number of extensions: 297045
Number of successful extensions: 720
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)