Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D03
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical pr...   118   3e-27
AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidas...   118   3e-27
Z81536-3|CAB63200.1|  333|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical
           protein T14F9.3 protein.
          Length = 555

 Score =  118 bits (283), Expect = 3e-27
 Identities = 51/123 (41%), Positives = 78/123 (63%), Gaps = 1/123 (0%)
 Frame = +3

Query: 135 PYFGMDESYNLXXXXXXXXXXX-XIWGVIRGLETWSQLFYLTNDFRELRINSTDIYDYPR 311
           P  G  E Y L             +WG +R +E+ S L +  +  +E +I + +I+D PR
Sbjct: 110 PVHGASEEYLLRVSLTEAVINAQTVWGALRAMESLSHLVFYDHKSQEYQIRTVEIFDKPR 169

Query: 312 YAHRGLLLDTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGA 491
           +  RG+++D+SRH+LS++ I + ++ M+ NK+NVLHWH+VD +SFPY S KFPEL  +GA
Sbjct: 170 FPVRGIMIDSSRHFLSVNVIKRQLEIMSMNKLNVLHWHLVDSESFPYTSVKFPELHGVGA 229

Query: 492 YHP 500
           Y P
Sbjct: 230 YSP 232


>AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 555

 Score =  118 bits (283), Expect = 3e-27
 Identities = 51/123 (41%), Positives = 78/123 (63%), Gaps = 1/123 (0%)
 Frame = +3

Query: 135 PYFGMDESYNLXXXXXXXXXXX-XIWGVIRGLETWSQLFYLTNDFRELRINSTDIYDYPR 311
           P  G  E Y L             +WG +R +E+ S L +  +  +E +I + +I+D PR
Sbjct: 110 PVHGASEEYLLRVSLTEAVINAQTVWGALRAMESLSHLVFYDHKSQEYQIRTVEIFDKPR 169

Query: 312 YAHRGLLLDTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGA 491
           +  RG+++D+SRH+LS++ I + ++ M+ NK+NVLHWH+VD +SFPY S KFPEL  +GA
Sbjct: 170 FPVRGIMIDSSRHFLSVNVIKRQLEIMSMNKLNVLHWHLVDSESFPYTSVKFPELHGVGA 229

Query: 492 YHP 500
           Y P
Sbjct: 230 YSP 232


>Z81536-3|CAB63200.1|  333|Caenorhabditis elegans Hypothetical
           protein F40D4.3 protein.
          Length = 333

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 438 DHRRY--ANGVRSFYSRPWHRYSLVSSITINSAWMCPAGV 325
           D RRY   NG +S   R W+R   V+S  + SA M PA V
Sbjct: 117 DDRRYRLVNGQKSSKIRKWYRLLFVTSSYV-SATMYPAPV 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,168,368
Number of Sequences: 27780
Number of extensions: 218654
Number of successful extensions: 575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)