Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D02
         (102 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   1.8  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    23   5.4  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    22   9.4  

>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
          Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 73 PHSRILYVPVGDPIDEP 23
          PHS  L VP  +P D+P
Sbjct: 2  PHSNTLIVPSTNPFDDP 18


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 82  PSPPHSRILYVPVGDPIDEP 23
           P  PHS+++ +P   P++ P
Sbjct: 357 PRYPHSQMVMLPARSPVEVP 376


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 7   PNLQSTAHQLGLPPGRI 57
           PNL+S A Q+  P GR+
Sbjct: 139 PNLRSHAGQMCFPGGRV 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,446
Number of Sequences: 5004
Number of extensions: 5452
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 15
effective length of database: 2,287,418
effective search space used: 41173524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)