Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D02
         (102 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473...    35   0.010
09_04_0653 + 19242063-19242780,19244170-19244324,19245420-192456...    25   6.2  

>02_03_0272 -
           17146578-17146691,17146806-17146926,17147260-17147365,
           17147469-17147551,17147688-17147815,17147897-17147983,
           17148064-17148174,17148502-17148669,17148753-17148837,
           17148921-17149037,17149127-17149203,17149299-17149370,
           17150538-17150634,17150750-17150952,17151115-17151217,
           17151324-17151391,17151461-17151514,17151595-17151704,
           17151982-17152060,17152171-17152233,17153410-17153529,
           17153913-17153969,17154071-17154187,17156426-17156476,
           17156591-17156689,17156787-17156935,17158090-17158312
          Length = 953

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +1

Query: 1   GEPNLQSTAHQLGLPPGRIIFSNVAAKEEHVRR 99
           GE  +++ A   G+ P +IIF++VA K EH+RR
Sbjct: 834 GETRVRAHAAARGVRPDQIIFTDVAMKNEHIRR 866


>09_04_0653 +
           19242063-19242780,19244170-19244324,19245420-19245609,
           19245830-19245885
          Length = 372

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 92  TCSSFAATFENIIRPGGRP 36
           TCSS   T E  + PGG+P
Sbjct: 221 TCSSHHITIEPTLAPGGQP 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,826,325
Number of Sequences: 37544
Number of extensions: 46278
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 14,793,348
effective HSP length: 15
effective length of database: 14,230,188
effective search space used: 256143384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)